Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq30472 104 7e-17 seq29016 91.5 4e-13 seq24943 89.7 2e-12 seq34519 87.8 5e-12 seq33003 87.8 5e-12 seq31805 87.8 5e-12 seq21288 87.8 5e-12 seq10454 86.0 2e-11 >seq30472 Length=20972 Score = 104 bits (114), Expect = 7e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 140541 GTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCA 140600 || ||||| || || || || || || || || || || || || || || || || Sbjct 12025 GTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCG 12084 Query 140601 GCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT 140660 || ||||| ||||| ||||| ||||| || |||||||| || || || ||||| || Sbjct 12085 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTG 12144 Query 140661 ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTT 140720 || || || ||||| || || || || || ||||| || | ||||| || || || || Sbjct 12145 ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTC 12204 Query 140721 TTTACAAAAATCTGCAT 140737 || || ||||||||||| Sbjct 12205 TTCACGAAAATCTGCAT 12221 >seq29016 Length=7713 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 5849 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 5908 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 5909 CCCTGCTTCTCCA 5921 >seq24943 Length=1857 Score = 89.7 bits (98), Expect = 2e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 67 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 8 Query 74548 TCGGGCA 74554 ||||||| Sbjct 7 TCGGGCA 1 >seq34519 Length=1486 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 196 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 137 Query 235950 CCCAGCATCTCCA 235962 || || |||||| Sbjct 136 TCCTGCTTCTCCA 124 >seq33003 Length=7909 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| | |||| | | Sbjct 921 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGAGATCGATA 862 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 861 CCCTGCTTCTCCA 849 >seq31805 Length=7251 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| || |||| ||||||||| ||||||||||||||| |||||| | | Sbjct 7010 GGGGATGTAGCTCAAATGTTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATA 7069 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 7070 CCCTGCTTCTCCA 7082 >seq21288 Length=515 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | Sbjct 230 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGGTA 171 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 170 CCCTGCTTCTCCA 158 >seq10454 Length=464 Score = 86.0 bits (94), Expect = 2e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 235891 GGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAAC 235950 ||||||||| |||| ||||||| ||||||||| ||||||||||||| | |||||| | || Sbjct 263 GGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTTCAGGGATCGATAC 204 Query 235951 CCAGCATCTCCA 235962 || || |||||| Sbjct 203 CCTGCTTCTCCA 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514537472533184