Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq32285 98.7 6e-16 seq30472 93.3 3e-14 >seq32285 Length=18199 Score = 98.7 bits (108), Expect = 6e-16 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||||| ||||| || || || |||||| || ||||| || || Sbjct 8349 GCCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 8408 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| |||| || || || || ||||| || || | |||||| ||||| ||||| Sbjct 8409 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 8468 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || || || ||| | || | ||| ||||| Sbjct 8469 GATGCCCTCCTTGTCTTGGATTTTCTG-CTTCACGTTGTCGATCGAGTCCGACGGCTCCA 8527 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 | || | || ||||| || || || || || ||||| || ||||||||| || |||| Sbjct 8528 CATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATGGTG-TTGT 8584 >seq30472 Length=20972 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || | || |||||| || ||||| || || || || || Sbjct 12004 AGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGA 12063 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || | |||||| ||||| ||||| | ||| ||| Sbjct 12064 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCC 12123 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || || || | || | || | ||| |||||| || | || Sbjct 12124 TTGTCTTGGATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGT 12182 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || || | ||| ||||| |||||||||||| Sbjct 12183 GATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATG 12222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314587952796224