Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq36741 138 5e-28 >seq36741 Length=22457 Score = 138 bits (152), Expect = 5e-28 Identities = 327/492 (66%), Gaps = 9/492 (2%) Strand=Plus/Minus Query 64219 CATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGA 64278 ||||||||| || || || | ||| || | ||||||||||| | ||||| ||| |||| Sbjct 15244 CATCGACGCGGAACATGCCATTGACGCTCACTACGCCAAGGCTTTGGGTGTCGACATCGA 15185 Query 64279 CAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCT 64338 | || || ||||||||| | ||||| | || |||||||||| || || Sbjct 15184 CGCGCTGTACGTCTCGCAGCCGGACTCAGGCGAAGAAGCTCTGGAGATCGCAGATACGCT 15125 Query 64339 CGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCG 64398 | || ||| || | | | | | || || | || |||||| || || ||||| || Sbjct 15124 CATCCGGTCGGGAGCGGTAGACCTTGTGGTGCTGGATAGTGTGGCTGCGCTTGTGCCACG 15065 Query 64399 CGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTC 64458 || ||||| || ||||| || || ||| || ||| ||||| ||||| |||||| Sbjct 15064 TGCAGAGCTTGAGGGCGAGATGGGAGACCAGCAGATCGCGCTGCAGGCGCGACTCATGAG 15005 Query 64459 GCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTG 64515 ||||| | ||||||||||| ||| | | |||| | || ||| | | ||| Sbjct 15004 CCAGGCGCTTCGCAAGCTCACGGGCTCGCTGTCCAAGTCGAACTGCACCATTA---TCTT 14948 Query 64516 GGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCAC 64575 |||||||| | || ||||| | |||| | | || || | ||| || | Sbjct 14947 CCTCAACCAGATCCGACAGAAGGTGGGCATCAT---CTTTGGATCTCCCGAAGTTACGTC 14891 Query 64576 GGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCAC 64635 |||||||| ||| ||| | | |||||||||||| || |||| |||| |||| | | Sbjct 14890 GGGCGGCACGGCGTTGCGCTACTACGCCTCAGTGCGGCTGGACATCCGCCGCAAAACGGC 14831 Query 64636 CGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAA 64695 ||||| ||||| | || ||||| || || ||| || || | ||||||||| Sbjct 14830 AATTAAGGAGGGCGACGTGGTCGTCGGTAATGAGACGACGGTCAAAGTTGCCAAGAACAA 14771 Query 64696 GCTGGCCCCGCC 64707 ||||||| |||| Sbjct 14770 GCTGGCCTCGCC 14759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232698424591808