Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_029079.1 Length=75339 Score E Sequences producing significant alignments: (Bits) Value seq36741 143 1e-29 >seq36741 Length=22457 Score = 143 bits (158), Expect = 1e-29 Identities = 389/593 (66%), Gaps = 12/593 (2%) Strand=Plus/Minus Query 66150 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66209 ||||||||||| ||||||||||| || || || ||| | || ||| || | Sbjct 15345 CGGGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGTAAGACGACGCTGGCACTGAGCTGC 15286 Query 66210 GTGGCCAATGCCCAGAAG---GCCGGTGGCAACGCTGCCTACATCGACGCTGAGCACTCC 66266 | || | || |||||| | ||||| ||| | ||||||||| || || || Sbjct 15285 ATCGCTGAGGCTCAGAAGTTTGAGGGTGGTGTGTGTGCTTTCATCGACGCGGAACATGCC 15226 Query 66267 CTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAG 66326 | ||| || | ||||||||||| | ||||| ||| ||||| || || ||| Sbjct 15225 ATTGACGCTCACTACGCCAAGGCTTTGGGTGTCGACATCGACGCGCTGTACGTCTCGCAG 15166 Query 66327 CCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTG 66386 |||||| | ||||| | || |||||||||| || ||| || ||| || | | | Sbjct 15165 CCGGACTCAGGCGAAGAAGCTCTGGAGATCGCAGATACGCTCATCCGGTCGGGAGCGGTA 15106 Query 66387 TCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGAC 66446 | | || || | || |||||| || || ||||| || || ||||| || ||||| Sbjct 15105 GACCTTGTGGTGCTGGATAGTGTGGCTGCGCTTGTGCCACGTGCAGAGCTTGAGGGCGAG 15046 Query 66447 ATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTC 66506 || || ||| || ||| ||||| ||||| |||||| ||||| | ||||||||| Sbjct 15045 ATGGGAGACCAGCAGATCGCGCTGCAGGCGCGACTCATGAGCCAGGCGCTTCGCAAGCTC 14986 Query 66507 ACCGGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 66563 || ||| | | |||| | || ||| | | ||| |||||||| | || || Sbjct 14985 ACGGGCTCGCTGTCCAAGTCGAACTGCACCATTA---TCTTCCTCAACCAGATCCGACAG 14929 Query 66564 AAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGG 66623 ||| | |||| | | || || | ||| || ||||||||| ||| ||| | Sbjct 14928 AAGGTGGGCATCAT---CTTTGGATCTCCCGAAGTTACGTCGGGCGGCACGGCGTTGCGC 14872 Query 66624 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 66683 | |||||||||||| || |||| |||| |||| | | ||||| ||||| | | Sbjct 14871 TACTACGCCTCAGTGCGGCTGGACATCCGCCGCAAAACGGCAATTAAGGAGGGCGACGTG 14812 Query 66684 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 66736 | ||||| || || ||| || || | |||||||||||||||| |||| Sbjct 14811 GTCGTCGGTAATGAGACGACGGTCAAAGTTGCCAAGAACAAGCTGGCCTCGCC 14759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 240851553542400