Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq36228 259 4e-64 >seq36228 Length=63081 Score = 259 bits (286), Expect = 4e-64 Identities = 468/675 (69%), Gaps = 17/675 (3%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || ||||| || || || || || || || | |||||| | ||| || | || || Sbjct 47919 GGAGACCGSACAGGCACAGGCACGCTGTCGATCTTCGGCGCGCAGATGCGGTTCAGTCTC 47978 Query 34211 CGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||| | | || ||| |||||||||| || | || | |||| || |||| |||| Sbjct 47979 AGGGACAACGTGTTCCCGYTGCTGACGACCAAGAGGGTCTTCTGGCGCGGTGTGGCCGAG 48038 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | || || | ||||| | || | ||| | || | Sbjct 48039 GAGCTGCTGTGGTTCATCAGCGGCGACACGAGCGCCCACACGCTGCAGCAGAAGGACATC 48098 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | || ||||||| | || ||||| || | |||||||| || ||| | | || || Sbjct 48099 CACATTTGGGACGGCAATGGATCTCGGGAGTATCTGGACACTCGAGGGCTGCAGTCGCGC 48158 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | || ||||| ||||| ||||||||| | |||||||| || |||| Sbjct 48159 GAAGTGGGCGATCTTGGACCGGTATACGGCTTCCAGTGGCGCCACTTTGGCGCCAAGTAC 48218 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | |||||||| | || ||||| | ||||||||| || | | |||||| | Sbjct 48219 AAGGACATGCACGCGGACTACACCGGCCAGGGCGTGGACCAGCTCGCTG-AGGTGATCCA 48277 Query 34507 CAC-CTT-GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 || ||| ||| | ||||| ||| | | || ||| ||| |||||||||||| Sbjct 48278 CAAGCTTCGAACC--AACCCGACGGACCGCCGCATTGTGCTGTCGGCGTGGAACCCGGCC 48335 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||| || |||||||||| ||||||||||||| || || | Sbjct 48336 GATCTAAGCGAGATGGCGCTGCCGCCGTGCCACATGTTCTGCCAATTCTATGTGGCCGAC 48395 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| |||||| | || || || |||| ||||||||| | || ||||| ||| Sbjct 48396 GGGGAGCTGTCGTGCCAGATGTACCAGCGGTCGGCCGACATGGGGCTCGGAGTGCCCTTC 48455 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 |||||||| || ||||| ||||| ||| || | || || || || || ||| || Sbjct 48456 AACATTGCCAGCTACGCACTGCTTACGCGGCTGGTAGCGCAGGTGGTCGGATTGAAGCC- 48514 Query 34745 GGGGAGCTGGTGCAT--ACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCG 34800 ||||| | | ||| |||| | || || ||||| | |||||||||||| | |||| Sbjct 48515 -GGGAGAT--TTCATTCACGTTATCGGCGACGCGCACGTGTACCTGAACCACGTGGAGCC 48571 Query 34801 GCTCCGGATCCAGCT 34815 ||| | || ||||| Sbjct 48572 GCTTCAGAAGCAGCT 48586 Score = 259 bits (286), Expect = 4e-64 Identities = 468/675 (69%), Gaps = 17/675 (3%) Strand=Plus/Minus Query 6530 AGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGT-- 6585 ||||| || | ||| |||| | |||||||||||| | ||||| || || | |||| Sbjct 48586 AGCTGCTTCTGAAGCGGCTCCACGTGGTTCAGGTACACGTGCGCGTCGCCGATAACGTGA 48527 Query 6586 ATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGC 6645 ||| | | ||||| || ||| || || || || || | || ||| ||||| || Sbjct 48526 ATGAA--ATCTCCC--GGCTTCAATCCGACCACCTGCGCTACCAGCCGCGTAAGCAGTGC 48471 Query 6646 GTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTG 6705 ||| || ||||||||||| ||||| || | ||||||||| |||| || || || | ||| Sbjct 48470 GTAGCTGGCAATGTTGAAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTG 48411 Query 6706 GCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGC 6765 ||| ||||||||||| | || || ||||||||||||| |||||||||| || ||||| Sbjct 48410 GCACGACAGCTCCCCGTCGGCCACATAGAATTGGCAGAACATGTGGCACGGCGGCAGCGC 48351 Query 6766 CATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTT 6825 |||| ||||| |||||||||||| ||| ||| || | | ||| ||||| Sbjct 48350 CATCTCGCTTAGATCGGCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTT 48291 Query 6826 CCGCTTC-AAG-GTGTCGATCACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 | ||| ||| ||| |||||| | | || ||||||||| | ||||| || | ||||| Sbjct 48290 --GGTTCGAAGCTTGTGGATCACCT-CAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTC 48234 Query 6883 CGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCC 6942 ||| | | || |||| || |||||||| | ||||||||| ||||| ||||| || Sbjct 48233 CGCGTGCATGTCCTTGTACTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCC 48174 Query 6943 CAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTG 7002 | |||||| | || || || | | ||| || |||||||| | || ||||| || | Sbjct 48173 AAGATCGCCCACTTCGCGCGACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATT 48114 Query 7003 AGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCAC 7062 ||||||| || | | || | ||| | || | ||||| | || || | Sbjct 48113 GCCGTCCCAAATGTGGATGTCCTTCTGCTGCAGCGTGTGGGCGCTCGTGTCGCCGCTGAT 48054 Query 7063 GAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||||||||||||||||||| |||| || |||| | || | || |||||||||| ||| Sbjct 48053 GAACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCGG 47994 Query 7123 AAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCCGT 7179 || | | ||| || || | || ||| | |||||| | || || || || || Sbjct 47993 GAACACGTTGTCCCTGAGACTGAACCGCATCTGCGCGCCGAAGATCGACAGCGTGCCTGT 47934 Query 7180 CCCGGTCCGGTCCCC 7194 || || ||||| || Sbjct 47933 GCCTGTSCGGTCTCC 47919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448055482076160