Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq32285 149 1e-30 seq35386 145 2e-29 seq12976 145 2e-29 seq30472 143 6e-29 seq36271 102 2e-16 seq25936 93.3 1e-13 >seq32285 Length=18199 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | || || Sbjct 8365 AGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCC 8424 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || |||||||| || | || |||||||| Sbjct 8425 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 8484 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || |||||||| ||||| | ||| || || || || || ||||||||| Sbjct 8485 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAGCGTGATCGTC 8544 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | |||||| || || | |||||| Sbjct 8545 TTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || || | ||||| Sbjct 7681 AGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 7740 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || |||||||| || | || |||||||| Sbjct 7741 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 7800 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 ||||| || || |||||||| ||||| | ||| || Sbjct 7801 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGA 7835 >seq35386 Length=12911 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | ||||||||||||||||| || || || || || || Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4626 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || ||||| ||||| ||||||||||| || || || ||||| Sbjct 4625 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 4566 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 4565 ATCTGCAT 4558 >seq12976 Length=6227 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || |||| || || | || || || ||||||||||| |||||||| Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| || | ||||||||||||||||| || || || || || || Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3569 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||| |||| || || || ||||| ||||| ||||||||||| || || || ||||| Sbjct 3568 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 3509 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 3508 ATCTGCAT 3501 >seq30472 Length=20972 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || || || || Sbjct 11772 ACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGT 11831 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||||||||||||| |||||||| || || || |||||||| || | || Sbjct 11832 ACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCC 11891 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| ||||| || || || || || ||||| | ||| || || || ||||| Sbjct 11892 TTCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAG 11951 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| || ||||| || || | |||||| Sbjct 11952 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || || || | || || |||||||||||||| Sbjct 12025 GTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCG 12084 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || || || |||||||| || | |||||||||||| ||||| || || || Sbjct 12085 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTG 12144 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| ||||| | ||| || || || || || ||||||||||| ||||| || ||| Sbjct 12145 ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTC 12204 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 12205 TTCACGAAAATCTGCAT 12221 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || || || | || || |||||||||||||| Sbjct 12253 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCG 12312 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || || || || |||||||| || | |||||||| || ||||| || || || Sbjct 12313 GCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGGATTTTCTGCTTG 12372 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| | ||| || || || ||||| ||||||||||| ||||| || ||| Sbjct 12373 ACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTC 12432 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||| || Sbjct 12433 TTCACGAAGATCTGCATCTT 12452 >seq36271 Length=16985 Score = 102 bits (112), Expect = 2e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 178180 CCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTA 178239 ||| |||| ||| ||| || ||||| || ||| || ||||||||||||| ||| Sbjct 2189 CCACAGCTGCTGCGCTTTGATCGTCTTGCGAGCGCGTCCCTCCTTCTCGTACTTTTCGTA 2248 Query 178240 GAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAA 178299 || ||||||| || || || || | ||| ||||| ||||| ||||||||||| Sbjct 2249 CAGGGCCTCGAACTCGTCGCCCCAGCACTCGTAGAGCCCGGGCGCCTCGTTGGGGCAGAA 2308 Query 178300 GAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 ||| |||||||| |||||| | | || || ||||||||||| || | ||||| || Sbjct 2309 GAGGCTCCACTGGCCGTCTGCTTCGACGCGCTTCATGAAGAGATCCGGCACCCAGAGCGC 2368 Query 178360 ATAGAA 178365 ||||| Sbjct 2369 GTAGAA 2374 >seq25936 Length=21514 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || |||| ||| || | ||||| Sbjct 2463 AGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 2404 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| |||||||| || || || |||||||| || | |||| Sbjct 2403 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATTCCT 2353 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||||||||| || || || || || || ||| |||| || || || ||| Sbjct 2277 CCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACGTCG 2218 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || ||||| ||||| |||||||| ||||| || || | ||||||||| || Sbjct 2217 AGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTCTG 2168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158603558822720