Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq30472 104 2e-17 seq35386 100 2e-16 seq12976 100 2e-16 seq32285 89.7 4e-13 >seq30472 Length=20972 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||| ||| || || || || || ||| || || || |||| || Sbjct 11784 CACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTC 11843 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| || || || |||||||||||||| |||||| | || || ||||| Sbjct 11844 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGG-ATGCCTTCCTTGTCTT 11902 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| |||| | | | || || | ||||||||| | |||||| | | Sbjct 11903 GGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCT 11962 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || ||||| ||||| Sbjct 11963 TGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||| ||| || || || || || ||| || || || |||| || Sbjct 12240 CACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTC 12299 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || || || || Sbjct 12300 CAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTATCTTG 12359 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||||||| |||| | | | || || | ||||||||| | |||||| | || Sbjct 12360 GATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTT 12419 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||||||||| || || ||||| ||||||||| Sbjct 12420 GCCCGTCAGCGTCTTCACGAAGATCTGCATCTTT 12453 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||| ||| || || || || || ||| || || || |||| || Sbjct 12012 CACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTC 12071 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | | || ||||| Sbjct 12072 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTG 12131 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| |||| ||| | | | || || | ||||||||| | |||||| | | Sbjct 12132 GATTTTCTGCTTGA-CGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGTGATCGTCT 12190 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || || || ||||| Sbjct 12191 TGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 >seq35386 Length=12911 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || || |||||| ||||||||| |||| | | | | Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 4627 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | || || |||||| || | |||||| | ||||||||||| ||||| ||||| Sbjct 4626 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 4567 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 4566 GATCTGCAT 4558 >seq12976 Length=6227 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156 || || || || || || | || || || |||| || ||||| ||||| || || || Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216 || ||||||||||| | || | || || |||||| ||||||||| |||| | | | | Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGA-CATTGTC 3570 Query 39217 ACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275 | | | || || |||||| || | |||||| | ||||||||||| ||||| ||||| Sbjct 3569 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 3510 Query 39276 GATTTGCAT 39284 ||| ||||| Sbjct 3509 GATCTGCAT 3501 >seq32285 Length=18199 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || ||| || || || |||| || Sbjct 8367 CACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCCTC 8426 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||||||||| | || | || ||| ||||| Sbjct 8427 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 8486 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||||||| || | ||| | | | || || || |||||| || | |||||| | | Sbjct 8487 GATTTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACATCTAGCGTGATCGTCT 8545 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| || || || ||||| ||||| Sbjct 8546 TGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429352278707264