Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq30472 116 3e-21 >seq30472 Length=20972 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || ||||| || |||||||| || || || || | || Sbjct 12221 ATGCAGATTTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCTTCG 12162 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | || | | || || ||||| ||||| ||||| | ||||| || || Sbjct 12161 GACTCGATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCGCCTGACCAG 12102 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| || || || |||| |||||| Sbjct 12101 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAAC 12042 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || || || || || Sbjct 12041 ATCCAGAAGGAGTCAACGTTGCACTTGGT 12013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337857475399424