Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3479 199 9e-46 seq32285 161 2e-34 seq30472 140 8e-28 seq1899 132 1e-25 seq35386 114 3e-20 seq12976 114 3e-20 seq32429 105 2e-17 seq30029 105 2e-17 seq36484 93.3 1e-13 seq36628 87.8 4e-12 seq36271 87.8 4e-12 seq27723 87.8 4e-12 seq33934 86.0 1e-11 >seq3479 Length=2936 Score = 199 bits (220), Expect = 9e-46 Identities = 217/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| |||||||| | ||||| | || ||| | | Sbjct 1494 AACTTTATATTTAATTTTTAGTGCTTTTGCTGGTATTGTTGGTACAACTTTATCTCTTTT 1435 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || | |||||||| || ||| |||||| || | |||||| ||| | || Sbjct 1434 AATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGTAATCATCAATTATA 1375 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || |||||| |||| || ||||| ||| | ||| |||| ||||| |||||||| | | | Sbjct 1374 TAATGTTATTGTTACTGCACATGCTTTTATCATGGTTTTTTTTTTAGTTATGCCCGCTTT 1315 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || || ||||||||||| ||||| |||||||||||||| Sbjct 1314 AATTGGGGGTTTTGGTAATTGGTTTGTACCTTTAATGATAGGTGCACCTGATATGGCTTT 1255 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 |||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 1254 TCCACGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 1207 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | |||||| ||| ||| ||||||| | || || | |||||| Sbjct 988 AAAGGTAATCTATGAAAACTTAAACCGGGTGCTCGCATATTATAAATAGTTGAAATAAAA 1047 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 1048 TTAATTGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 1107 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| |||| |||||| || ||||| || || || Sbjct 1108 ACTGAAGGTCCTGAATGGGCTTGTACACTAGA---TAACGGTGGATAAACAGTCCAACCT 1164 Query 371542 GT 371543 || Sbjct 1165 GT 1166 Score = 96.9 bits (106), Expect = 8e-15 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||||||||| || || |||||||||||||| | | |||||| ||||| || ||| Sbjct 811 TCTGGATGACCAAAGAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCAGAT 870 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 || ||| |||| |||||| ||||||||||| ||||| |||| Sbjct 871 GGGTCATAAAAAGAAGTATTTAAATTTCTATCGGTTAACAACA 913 >seq32285 Length=18199 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 8355 ACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 8414 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 8415 GCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 8474 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| || |||||||| ||||| | ||| || | ||||| |||| Sbjct 8475 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAG 8534 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||||||| || | ||| | ||||| Sbjct 8535 CGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Score = 111 bits (122), Expect = 4e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||| || || Sbjct 7671 ACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 7730 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| ||||| || || Sbjct 7731 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 7790 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCAC 225665 |||||||||||||| || |||||||| ||||| | ||| || | ||||| Sbjct 7791 CTCCTTGTCTTGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 7844 >seq30472 Length=20972 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| || | ||| | || || || || |||| ||||| ||| | || Sbjct 11772 ACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGT 11831 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || ||||| || || || || Sbjct 11832 ACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCC 11891 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||| || ||||| ||| ||||| | ||| || | |||||||| | Sbjct 11892 TTCCTTGTCTTGGATTTTCTGCTTGACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAG 11951 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||||| || || | ||| | ||||| Sbjct 11952 CGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| | || || || || |||| ||||| ||| || || Sbjct 12229 CGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTA 12288 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || ||||| || || || || ||||| ||||| || ||| Sbjct 12289 CGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCT 12348 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| |||||||| || ||||| ||| ||||| | ||| || | |||||||| | | Sbjct 12349 TCCTTATCTTGGATTTTCTGCTTGACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGC 12408 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||||||| || || | ||| | ||||| || Sbjct 12409 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 12452 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| | || || || || |||| ||||| ||| | || Sbjct 12001 CGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTA 12060 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || || || ||||| ||||| || ||| Sbjct 12061 CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCT 12120 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||| || ||||| || ||||| | ||| || | |||||||| | | Sbjct 12121 TCCTTGTCTTGGATTTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGC 12180 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||||| || || | ||| | ||||| Sbjct 12181 GTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 >seq1899 Length=4819 Score = 132 bits (146), Expect = 1e-25 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || ||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 428 AAAATCTGTCCATCAGTAATTGAAATAACATTTGTAGGAATATAAGCAGAAACATCACCA 487 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||||| || ||||| || |||| ||| || ||||||| |||||||| Sbjct 488 GCTTGTGTTTCGATAATTGGTAATGCGGTTAATGAACCCCCACCAATTTTTTTATT 543 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 5014 CAACACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATA 5073 || || | ||||| | || || || |||||||||| | |||| |||||||||||||||| Sbjct 761 CACCATTACAATATTTAGCACCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATA 702 Query 5074 ATGGTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||||||||||| | || | || ||||||||| ||||||| Sbjct 701 ATGGTAAACATGCTGTTATTTTTTATGATGATTTATCTAAACAA 658 >seq35386 Length=12911 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || |||||| Sbjct 4715 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 4656 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | ||||| || | |||| Sbjct 4655 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACATCGAGCGTG 4596 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || ||||| ||||||| ||||| Sbjct 4595 ATGGTCTTTCCCGTCAGGGTTTT 4573 >seq12976 Length=6227 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| ||||| || |||||| Sbjct 3658 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCTTCC 3599 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| ||||| || ||||| ||| || ||| |||| || | ||||| || | |||| Sbjct 3598 TTGTCCTGGATTTTCTGCTTGACATTGTCAATGCTGTCCGACGGCTCCACATCGAGCGTG 3539 Query 225676 ATCGTCTTGCCCGTCAAAGTTTT 225698 || ||||| ||||||| ||||| Sbjct 3538 ATGGTCTTTCCCGTCAGGGTTTT 3516 >seq32429 Length=2657 Score = 105 bits (116), Expect = 2e-17 Identities = 87/104 (84%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| ||| |||||||||||||||||||||| | ||||||||| || |||| ||||| Sbjct 2342 TTGAAAGATTGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTAAA--GGCAG 2285 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| ||| |||||||||| || ||| Sbjct 2284 CAGTGGGGAATTTTGGACAATGAGCGCAAGCTTGATCCAGCAAT 2241 >seq30029 Length=3275 Score = 105 bits (116), Expect = 2e-17 Identities = 126/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||| ||||||| | || || | |||||| Sbjct 1094 AAAGGTAATCTATGAAAACTTAAACCAGGGGCTCGCATATTATAAATGGTTGAAATAAAA 1153 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 1154 TTAATAGCACCTAATAATGAAGAAATACCTGTTAAATGTAAACTAAAGATAGCTAAATCA 1213 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAAC 371531 || ||| |||||||| || |||| | || ||| || || ||||| Sbjct 1214 ACAGAAGGTCCGGAGTGTGCCTGTACACTTGA---TAAGGGTGGATAAAC 1260 >seq36484 Length=4223 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| | ||||||||| ||||||| ||||||| ||||| | Sbjct 3380 TAGGTGTCACAAAATAGGGGGTTGTGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 3321 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 || | | ||||||||||||||||||| Sbjct 3320 GTGACATGATGTATAGGGTCTGACAC 3295 >seq36628 Length=12597 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 372632 AGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACGAT 372691 |||| || |||| ||||||||||| ||||||| ||||||| ||||| | |||| | ||| Sbjct 5039 AGAAGAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGAT 5098 Query 372692 GTATAGGGTCTGACAC 372707 |||||||||||||||| Sbjct 5099 GTATAGGGTCTGACAC 5114 >seq36271 Length=16985 Score = 87.8 bits (96), Expect = 4e-12 Identities = 167/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 193526 GTCTTTGTAGACGATGAAGGGCATGCCCACCTCCGCTTGAGCGACGAGAATGTGATGCCA 193585 ||| ||| | | ||||| |||| |||| ||| || ||| | || ||| ||| Sbjct 2132 GTCCTTGAACAGCATGAACGGCACGCCCGTCTCAATCTGGGCGTCCAGGATGGAGAACCA 2191 Query 193586 AAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTACAG 193645 || | || ||||| | ||| | | || ||| ||| ||||||||||||||||||| Sbjct 2192 CAGCTGCTGCGCTTTGATCGTCTTGCGAGCGCGTCCCTCCTTCTCGTACTTTTCGTACAG 2251 Query 193646 TTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAAGAG 193705 |||| || || | || || |||| ||| ||||| || || || ||||| ||||| Sbjct 2252 GGCCTCGAACTCGTCGCCCCAGCACTCGTAGAGCCCGGGCGCCTCGTTGGGGCAGAAGAG 2311 Query 193706 ACTCCAATCTCCATCACTTTCCACCCTCTTCATGAAGAGGTCAGATGTCCAAATGGCGTA 193765 ||||| | || || ||| || | |||||||||||| || | ||| | ||||| Sbjct 2312 GCTCCACTGGCCGTCTGCTTCGACGCGCTTCATGAAGAGATCCGGCACCCAGAGCGCGTA 2371 Query 193766 GAAAAG 193771 ||| || Sbjct 2372 GAACAG 2377 >seq27723 Length=2493 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| | ||||||| | ||||||| ||||||| ||||| | Sbjct 489 TAGGTGTCACAAAATAGGGGGTTGTGACTGTTCAATAAAAACTTAGGACTCTGCTAAATG 430 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 || | | ||||||||||||||||||| Sbjct 429 GTGACATGATGTATAGGGTCTGACAC 404 >seq33934 Length=22672 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 372622 TAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 ||||||| ||| ||||| |||| ||||||||||| ||||||| ||||||| ||||| | Sbjct 15217 TAGGTGTCACAAAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATG 15276 Query 372682 GTAAAACGATGTATAGG 372698 |||| | |||||||||| Sbjct 15277 GTAACATGATGTATAGG 15293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191966965788032