Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq36228 167 2e-36 >seq36228 Length=63081 Score = 167 bits (184), Expect = 2e-36 Identities = 435/665 (65%), Gaps = 21/665 (3%) Strand=Plus/Minus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| |||||||||| ||||| ||||| || || || | ||| | || |||||| Sbjct 48574 AGCGGCTCCACGTGGTTCAGGTACACGTGCGCGTCGCCGATAACGTGAATGAAATCTCCC 48515 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | | ||| || || || | || ||| || || | ||||||||| ||||| Sbjct 48514 GGCTTCAATCCGACCACCTGCGCTACCAGCCGCGTAAGCAGTGCGTAGCTGGCAATGTTG 48455 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 |||||||| |||||||||||||| | |||| |||||| | ||||||||| ||||| ||| Sbjct 48454 AAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTGGCACGACAGCTCCCCG 48395 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| ||| || || || | ||||| |||||||| || || ||||| | | Sbjct 48394 TCGGCCACATAGAATTGGCAGAACATG---TGGCACGGCGGCAGCGCCATCTCGCTTAGA 48338 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TG 29941 || |||||||| || ||| | ||||| | ||| |||||| | | | || Sbjct 48337 TCGGCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTTGGTTCGAAGCTTG 48278 Query 29942 AGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNN 30000 || ||| | || ||||| ||||| ||| || | |||||| | Sbjct 48277 TGGATCAC----CTCAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTCCGCGTGCATGTC 48222 Query 30001 NNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTC 30060 | || || | ||||||||| ||||| |||||||| || || ||| | Sbjct 48221 CTTGTACTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCCAAGATCGCCCAC 48162 Query 30061 TTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGA 30119 ||| | | | | ||||| | |||||| | | || | || || ||| ||||||| | Sbjct 48161 TTCGC-GCGACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATTGCCGTCCCAAA 48103 Query 30120 TCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 | | | |||||| ||| | || | | ||| || |||| ||||||||||| Sbjct 48102 TGTGGATGTCCTTCTGCTGCAGCGTGTGGGCGCTCGTGTCGCCGCTGATGAACCACAGCA 48043 Query 30180 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC----TGT 30235 ||||||| | || | ||| ||||||||||||||||| || | || ||| ||| Sbjct 48042 GCTCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCGGGAACACGTTGT 47983 Query 30236 CCCTTGAGGCCGTACCTCGCCTGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTG 30295 ||| |||| | | ||| | ||| | || || || |||| || |||||||| | | Sbjct 47982 CCC-TGAGACTGAACCGCATCTGCGCGCCGAAGATCGACAGCGTGCCTGTGCCTGTSCGG 47924 Query 30296 TCTCC 30300 ||||| Sbjct 47923 TCTCC 47919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405980402190208