Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq36228 201 8e-47 seq36590 82.4 6e-11 >seq36228 Length=63081 Score = 201 bits (222), Expect = 8e-47 Identities = 415/613 (68%), Gaps = 14/613 (2%) Strand=Plus/Minus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| |||||||| | |||||| ||||| ||||| || | ||| Sbjct 48586 AGCTGCTTCTGAAGCGGCTCCACGTGGTTCAGGTACACGTGCGCGTCGCCGATAACGTGA 48527 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 | || |||||||| | | ||| || || || | || ||| || || | |||| Sbjct 48526 ATGAAATCTCCCGGCTTCAATCCGACCACCTGCGCTACCAGCCGCGTAAGCAGTGCGTAG 48467 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||| ||||| ||||| || |||||||||||||| |||||| |||||| | ||| ||| Sbjct 48466 CTGGCAATGTTGAAGGGCACTCCGAGCCCCATGTCGGCCGACCGCTGGTACATCTGGCAC 48407 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || ||||| || ||| || || || || || | ||||||||| || || ||||| Sbjct 48406 GACAGCTCCCCGTCGGCCACATAGAATTGGCAGAACATGTGGCACGGCGGCAGCGCCATC 48347 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 27429 || | || |||||||| || ||| | ||||| | ||| |||||| | Sbjct 48346 TCGCTTAGATCGGCCGGGTTCCACGCCGACAGCACAATGCGGCGGTCCGTCGGGTTGGTT 48287 Query 27430 CTGA---TGAGGTCCACGGCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTAC 27485 | | || || ||| | || ||||| ||||| ||| || | |||||| | Sbjct 48286 CGAAGCTTGTGGATCAC----CTCAGCGAGCTGGTCCACGCCCTGGCCGGTGTAGTCCGC 48231 Query 27486 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAG 27545 ||||||| |||||| || || || || | ||| ||||| ||||| |||||||| || Sbjct 48230 GTGCATGTCCTTGTACTTGGCGCCAAAGTGGCGCCACTGGAAGCCGTATACCGGTCCAAG 48171 Query 27546 GTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 || ||| |||| | | | | ||||| | |||||| | | || | || || ||| Sbjct 48170 ATCGCCCACTTCGC-GCGACTGCAGCCCTCGAGTGTCCAGATACTCCCGAGATCCATTGC 48112 Query 27605 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 27664 ||||||| || | | |||||| ||| | || | | ||| || |||| || Sbjct 48111 CGTCCCAAATGTGGATGTCCTTCTGCTGCAGCGTGTGGGCGCTCGTGTCGCCGCTGATGA 48052 Query 27665 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 |||||||||||||||| | || | ||| ||||||||||||||||| || | || | Sbjct 48051 ACCACAGCAGCTCCTCGGCCACACCGCGCCAGAAGACCCTCTTGGTCGTCAGCARCGGGA 47992 Query 27725 AC----TGTCCCT 27733 || ||||||| Sbjct 47991 ACACGTTGTCCCT 47979 >seq36590 Length=19788 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44919 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 44978 ||| ||||| |||||||| | |||||| | |||||||| ||| | ||| || || || Sbjct 15259 GTTGAACAGGATGACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCCGCGCCCGT 15318 Query 44979 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 45038 ||| || || || || || |||| || || | || ||||| | | ||||| |||| Sbjct 15319 GTCGATGAACTTCTTGAGCGCCAACCCAGAGCGCGGCGCCACACGGGCGTAGCAGCCCTC 15378 Query 45039 GGGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCCTAAGGAGGGGACCACGAC 45098 |||| | |||||||||||||| ||||| || |||| | |||| ||| | Sbjct 15379 CGGCACGGCGATTACCAGGTCCGTCTTGACCAGCCCCTTGCCACCCGCCGGGATGACGGC 15438 Query 45099 CGGGTGAGCGGCCGCCAGGTCGTAACCCGCGGC 45131 | ||||||| |||||| | ||||| || Sbjct 15439 GTCATAGGCGGCCGACAGGTCCAACCCCGCCGC 15471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369340899589568