Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq30472 131 4e-25 seq32285 122 2e-22 seq35386 111 4e-19 seq12976 111 4e-19 >seq30472 Length=20972 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| ||| || || | || || || || || ||| Sbjct 12025 GTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCG 12084 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||||||||| | || |||||||||||| ||||| ||||| || ||| Sbjct 12085 GCGAAGATCAGACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGGATTTTCTGCTTG 12144 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| ||| ||| || ||||| || || || |||||||| || ||| Sbjct 12145 ACGTTGTCGATCGAGTCCGAAGGCTCCACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTC 12204 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||| | |||||| Sbjct 12205 TTCACGAAAATCTGCAT 12221 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| ||| || || | || || || || || ||| Sbjct 11797 GTTGACTCCTTCTGGATGTTGTAGTCGCTTAGCGTACGACCGTCCTCCAGCTGCTTGCCG 11856 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||||||||| | | ||| |||||||| ||||| ||||| || ||| Sbjct 11857 GCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATTTTCTGCTTG 11916 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||| ||| ||| || || || || || || |||||||| || ||| Sbjct 11917 ACATTGTCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTC 11976 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||||| |||||| Sbjct 11977 TTCACGAAGATCTGCAT 11993 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| ||| | || | || || || || || ||| Sbjct 12253 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGACCGTCCTCCAGCTGCTTGCCG 12312 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || || | ||||||||| | || ||| |||||||| ||||| ||||| || ||| Sbjct 12313 GCGAAAATCAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTATCTTGGATTTTCTGCTTG 12372 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||| ||| ||| || || || || || || |||||||| || ||| Sbjct 12373 ACATTATCGATCGAGTCCGAAGGCTCCACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTC 12432 Query 152088 TTCACGAAGACCTGCATTTT 152107 |||||||||| |||||| || Sbjct 12433 TTCACGAAGATCTGCATCTT 12452 >seq32285 Length=18199 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || ||||||||||| ||| | || | ||| || Sbjct 8365 AGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGCCCGTCC 8424 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| || ||||| ||| Sbjct 8425 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 8484 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || || | || | ||| || ||| || || || || || || Sbjct 8485 TGGATTTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACATCTAGCGTGATCGTC 8544 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | |||||||||||||| |||||| Sbjct 8545 TTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || ||||||||||| ||| | || | ||||| Sbjct 7681 AGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCATCC 7740 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | || ||| || ||||| ||| Sbjct 7741 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCT 7800 Query 152013 TGAATTTTTTGTTTGAC 152029 || ||||| || || || Sbjct 7801 TGGATTTTCTGCTTCAC 7817 >seq35386 Length=12911 Score = 111 bits (122), Expect = 4e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || ||| |||||||| || || ||||| || |||||| | || Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4626 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || || ||||| || || ||||| ||| Sbjct 4625 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 4566 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 4565 ATCTGCATGATTCCCT 4550 >seq12976 Length=6227 Score = 111 bits (122), Expect = 4e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| || | | || | || || || || || ||||||||||| Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | || ||| |||||||| || || ||||| || |||||| | || Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 3569 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||||| || ||| || || || || || || || ||||| || || ||||| ||| Sbjct 3568 ATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAAG 3509 Query 152097 ACCTGCATTTTACCCT 152112 | |||||| | |||| Sbjct 3508 ATCTGCATGATTCCCT 3493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153274881226688