Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq32285 179 8e-40 seq30472 170 4e-37 seq35386 136 8e-27 seq12976 136 8e-27 seq22780 116 8e-21 seq17832 116 8e-21 seq30005 113 9e-20 seq25936 95.1 3e-14 >seq32285 Length=18199 Score = 179 bits (198), Expect = 8e-40 Identities = 178/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | || || || |||||||||||||| Sbjct 8350 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 8409 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 8410 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 8469 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||||||||| || ||| || ||| | ||||| | |||||| | || || Sbjct 8470 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATCGAGTCCGACGGCTCCAC 8528 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| |||||||||||||| ||||| |||||||| Sbjct 8529 ATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 8576 Score = 131 bits (144), Expect = 4e-25 Identities = 133/171 (78%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || |||||||| || || ||||| || | || || || |||||||||||||| Sbjct 7666 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 7725 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 7726 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 7785 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGA 283042 || ||||||||||||||||| || ||| || ||| | ||||| | |||||| Sbjct 7786 ATGCCCTCCTTGTCTTGGATTTTCTGC-TTCACGTTGTCGATCGAGTCCGA 7835 >seq30472 Length=20972 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || |||| || ||||| || || |||||||||||||| Sbjct 11995 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 12054 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| || || || ||||| ||||||| ||| || |||||| ||| Sbjct 12055 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 12114 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || ||| | ||||| | |||||||| || || Sbjct 12115 ATTCCTTCCTTGTCTTGGATTTTCTGC-TTGACGTTGTCGATCGAGTCCGAAGGCTCCAC 12173 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 12174 GTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCAT 12221 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || |||| || ||||| || || |||||||||||||| Sbjct 12223 CCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTC 12282 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| || || || ||||| || |||| ||| || |||||| ||| Sbjct 12283 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGGG 12342 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| |||||||| || ||| || || ||||||| | |||||||| || || Sbjct 12343 ATGCCTTCCTTATCTTGGATTTTCTGC-TTGACATTATCGATCGAGTCCGAAGGCTCCAC 12401 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| || Sbjct 12402 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 12452 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || ||||| || || |||||||||||||| Sbjct 11767 CCGCCACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 11826 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || ||||| || || || ||||| ||||||| ||| || |||||| || Sbjct 11827 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGG 11886 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||||||||| || ||| || || | ||||| | |||||||| || || Sbjct 11887 ATGCCTTCCTTGTCTTGGATTTTCTGC-TTGACATTGTCGATCGAGTCCGAAGGCTCCAC 11945 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 11946 GTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 11993 >seq35386 Length=12911 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 4745 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4686 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || || |||||||| ||||| || ||| || || | || Sbjct 4685 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 4627 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| || || || || Sbjct 4626 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 4567 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 4566 GATCTGCAT 4558 >seq12976 Length=6227 Score = 136 bits (150), Expect = 8e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 3688 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 3629 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | || || |||||| ||| || || |||||||| ||||| || ||| || || | || Sbjct 3628 AGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 3570 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||||| | || || ||||| ||||| ||||| ||||||| || || || || Sbjct 3569 AATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACAAA 3510 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 3509 GATCTGCAT 3501 >seq22780 Length=3860 Score = 116 bits (128), Expect = 8e-21 Identities = 233/343 (68%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 273596 AGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCAC 273655 ||||||||| | |||||| | |||||||| || || |||||| | |||||||| Sbjct 2109 AGGGTTGTAGTTGGGAACGGAGCTGGACCAACCCGTTCCGATACCGTCACTGCCATTCAC 2050 Query 273656 CAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTA 273715 || | | |||||||| |||| || | ||||||||||| | ||||| |||| Sbjct 2049 GAGCACCATGGGGATAATCGGGATGTACCACTCGGGCTCAATCGACTGGCCATCTTCGTC 1990 Query 273716 AAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAG 273775 || ||||| | || | | ||| | || | | ||||| | | | ||| Sbjct 1989 CAGATACTTGAGCACGTCGTTGTCCAGCGGATCGTAGAGTCGACGCGTGAGCTGCTCCAG 1930 Query 273776 TTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAA 273835 || ||||||||||| | || || || ||||| ||||| ||| | || ||| || Sbjct 1929 GTTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTACCACCCATCAGGCGCGTACCGAA 1870 Query 273836 CTGACCC-TCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||||| ||||| | ||| || ||||||||||| |||||| | ||||| ||||||| Sbjct 1869 CTGACCGATCGGGGAC-AGCAGGTGGATGTTGTTGCTTCCGACGAAGTCCTGCGCCATAT 1811 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGC 273937 |||||||| ||||| | |||||||||| || || || Sbjct 1810 TCACGATACAGCCCTGCAAACTCGCCTCGCCGTGATGGTAAGC 1768 >seq17832 Length=15358 Score = 116 bits (128), Expect = 8e-21 Identities = 233/343 (68%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 273596 AGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCAC 273655 ||||||||| | |||||| | |||||||| || || |||||| | |||||||| Sbjct 13374 AGGGTTGTAGTTGGGAACGGAGCTGGACCAACCCGTTCCGATACCGTCACTGCCATTCAC 13433 Query 273656 CAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTA 273715 || | | |||||||| |||| || | ||||||||||| | ||||| |||| Sbjct 13434 GAGCACCATGGGGATAATCGGGATGTACCACTCGGGCTCAATCGACTGGCCATCTTCGTC 13493 Query 273716 AAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAG 273775 || ||||| | || | | ||| | || | | ||||| | | | ||| Sbjct 13494 CAGATACTTGAGCACGTCGTTGTCCAGCGGATCGTAGAGTCGACGCGTGAGCTGCTCCAG 13553 Query 273776 TTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAA 273835 || ||||||||||| | || || || ||||| ||||| ||| | || ||| || Sbjct 13554 GTTGGTGAAAATGTAACGAGCGCTGGCCGCATCCTTACCACCCATCAGGCGCGTACCGAA 13613 Query 273836 CTGACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATAT 273894 |||||| ||||| | ||| || ||||||||||| |||||| | ||||| ||||||| Sbjct 13614 CTGACCGATCGGGGA-CAGCAGGTGGATGTTGTTGCTTCCGACGAAGTCCTGCGCCATAT 13672 Query 273895 TCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGC 273937 |||||||| ||||| | |||||||||| || || || Sbjct 13673 TCACGATACAGCCCTGCAAACTCGCCTCGCCGTGATGGTAAGC 13715 >seq30005 Length=11534 Score = 113 bits (124), Expect = 9e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088 ||||| || || | ||| ||||| || || | |||||| |||||||||||| || Sbjct 1986 GGGAAGCCCTCGAGCTGGCCGTTGGAGATGGCGCGCATCAGCGTCGACTTGCCACATCCG 2045 Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148 ||||||||||| ||||| || || | || ||| || || ||||| ||||||||| Sbjct 2046 TTGGGGCCGCACAGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGC 2105 Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 |||||| ||||||| || || || ||||||||||| | || ||||| Sbjct 2106 AGAATCATACCACCGTAGGCGAGCGAGAACTCACAGTTGCAAAGGTC 2152 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| |||| ||| || Sbjct 1128 TCCTTGTCCTCACCAGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCCAGG 1187 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| || |||||||| | |||||| || ||| Sbjct 1188 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCGACGTAAGCGAAACGCATGGAAGGGTGC 1247 Query 316282 TTCCAAAC 316289 |||||||| Sbjct 1248 TTCCAAAC 1255 >seq25936 Length=21514 Score = 95.1 bits (104), Expect = 3e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | || || || |||||||||||||| | Sbjct 2479 ACCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 2420 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||||||||| || || || || || ||||||| ||| || |||||| Sbjct 2419 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCA 2365 Score = 86.0 bits (94), Expect = 1e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| ||||| || ||||| || | || || ||||||| | || || Sbjct 2279 TACCCTCCTTGTCCTGGATTTTCTGCTTG-ACATTGTCAATGCTGTCCGACGGCTCCACG 2221 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||||||| Sbjct 2220 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCATTTTC 2170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046243945814912