Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq30472 141 2e-28 seq35386 131 4e-25 seq12976 131 4e-25 seq32285 129 1e-24 >seq30472 Length=20972 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || || |||||||| || || ||||| || ||| Sbjct 12218 CAGATTTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTTGACGTGGAGCCTTCGGAC 12159 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| |||||||| || || || || ||||| ||||||||||| || |||||||| Sbjct 12158 TCGATCGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCGCCTGACCAGCAG 12099 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 12098 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAACATC 12039 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| |||| |||| Sbjct 12038 CAGAAGGAGTCAACGTTGCA-CTTG 12015 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || |||||||| ||||| ||||| || ||| Sbjct 11990 CAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTCGACGTGGAGCCTTCGGAC 11931 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| || ||||| || || || || ||||| ||||| ||||| || |||||||| Sbjct 11930 TCGATCGACAATGTCAAGCAGAAAATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAG 11871 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 11870 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGTACGCTAAGCGACTACAACATC 11811 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| |||| |||| Sbjct 11810 CAGAAGGAGTCAACGTTGCA-CTTG 11787 >seq35386 Length=12911 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || ||||| || ||||| ||||| ||||| || ||| Sbjct 4561 CAGATCTTTGTGAAAACCCTGACGGGAAAGACCATCACGCTCGATGTGGAGCCGTCGGAC 4620 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 4621 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 4680 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 4681 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 4740 Query 178104 CAAAA 178108 || || Sbjct 4741 CAGAA 4745 >seq12976 Length=6227 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || ||||| || ||||| ||||| ||||| || ||| Sbjct 3504 CAGATCTTTGTGAAAACCCTGACGGGAAAGACCATCACGCTCGATGTGGAGCCGTCGGAC 3563 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| || || ||||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 3564 AGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAGCAG 3623 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 3624 CGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAACATC 3683 Query 178104 CAAAA 178108 || || Sbjct 3684 CAGAA 3688 >seq32285 Length=18199 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || |||||||| || || ||||| || ||| Sbjct 8573 CAGATCTTCGTGAAGACTTTGACGGGCAAGACGATCACGCTAGATGTGGAGCCGTCGGAC 8514 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||||| ||||| || || || || || ||||| || || ||||| || |||||||| Sbjct 8513 TCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAG 8454 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | || || ||| || ||| || Sbjct 8453 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGAGCGACTACAACATC 8394 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || |||||||| || || Sbjct 8393 CAGAAGGAGTCTACACTGCACCTGGT 8368 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||| | ||||| ||||| || || || || || ||||| || || ||||| || ||| Sbjct 7835 TCGGACTCGATCGACAACGTGAAGCAGAAAATCCAAGACAAGGAGGGCATCCCGCCTGAC 7776 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || || ||||||||||| || ||||| || ||||| | || || ||| || Sbjct 7775 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGAGCGACTAC 7716 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| |||| || || || |||||||| || || Sbjct 7715 AACATCCAGAAGGAGTCTACACTGCACCTGGT 7684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203161666620032