Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq32285 168 6e-37 seq30472 154 1e-32 seq35386 141 9e-29 seq12976 141 9e-29 seq25936 95.1 1e-14 >seq32285 Length=18199 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | |||||| ||||| || ||||||||| ||||| |||||| Sbjct 8349 GCCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCT 8408 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 8409 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 8468 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| |||||| |||||| ||| | | | | ||| || ||||| Sbjct 8469 GATGCCCTCCTTGTCTTGGATTTTCTGCTTC-ACGTTGTCGATCGAGTCCGACGGCTCCA 8527 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| ||||| || ||||||| ||||| ||||| ||||||||| Sbjct 8528 CATCTAGCGTGATCGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 8577 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | |||||| ||||| || ||||||||| ||||| |||||| Sbjct 7666 CCGCCACGCAGACGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTC 7725 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 7726 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 7785 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 | || ||||||||| |||||| ||||||| Sbjct 7786 ATGCCCTCCTTGTCTTGGATTTTCTGCTTCA 7816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | |||||||||||| || ||||||||| ||||| |||||| Sbjct 7513 CCGCCGCGAAGACGCAGCACCAGATGCAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTT 7572 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAG 41736 || ||||| | || || ||||||||||||||||| ||||| Sbjct 7573 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAG 7613 >seq30472 Length=20972 Score = 154 bits (170), Expect = 1e-32 Identities = 176/231 (76%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| |||| ||| ||||||||| ||||| |||||| Sbjct 11994 GCCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT 12053 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 || || || |||| || ||||||||||||||||| ||||| ||||| ||||| |||| Sbjct 12054 TAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 12113 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || || |||||||| |||||| ||||| ||| | | | | ||| | |||| Sbjct 12114 GATTCCT-TCCTTGTCTTGGATTTTCTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCC 12171 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || | ||| ||||| || |||||||||||||| ||||||||||||||| Sbjct 12172 ACGTCAAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAAATCTGCATG 12222 Score = 149 bits (164), Expect = 6e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| |||| ||| ||||||||| ||||| |||||| Sbjct 11767 CCGCCACGAAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCTT 11826 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 11827 AGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGTGGG 11886 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||| |||||| ||||| || | || | | ||| | ||||| Sbjct 11887 ATGCCTTCCTTGTCTTGGATTTTCTGCTTGACATTGTCG--ATCGAGTCCGAAGGCTCCA 11944 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| ||||| || |||||||||||||| ||||| ||||||||| Sbjct 11945 CGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 11994 Score = 140 bits (154), Expect = 3e-28 Identities = 172/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | ||||| |||| ||| ||||||||| ||||| |||||| Sbjct 12222 GCCACCGCGCAGACGCAGCACCAAGTGCAACGTTGACTCCTTCTGGATGTTGTAGTCGCT 12281 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || ||||||||||||||||| ||||| ||||| ||||| | || Sbjct 12282 CAGCGTACGACCGTCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGCGG 12341 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||| || |||||| ||||| || || | | ||| | |||| Sbjct 12342 GATGCCTTCCTTATCTTGGATTTTCTGCTTGACATTATCG--ATCGAGTCCGAAGGCTCC 12399 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || | ||| ||||| || |||||||||||||| ||||| |||||||| || Sbjct 12400 ACGTCGAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 12452 >seq35386 Length=12911 Score = 141 bits (156), Expect = 9e-29 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 4747 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4688 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | || | || ||||||||| |||||| ||||| || | Sbjct 4687 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACATTG 4629 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || |||||||| || || || Sbjct 4628 TCAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACA 4569 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 4568 AAGATCTGCATG 4557 >seq12976 Length=6227 Score = 141 bits (156), Expect = 9e-29 Identities = 148/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| ||||| ||||| |||| |||||||||||||||||||| | Sbjct 3690 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 3631 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||| | || | || ||||||||| |||||| ||||| || | Sbjct 3630 TCAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCTGCTT-GACATTG 3572 Query 41793 ACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 || | |||| || |||||| || | ||| || || || |||||||| || || || Sbjct 3571 TCAATGCTGTCCGACGGCTCCACATCGAGCGTGATGGTCTTTCCCGTCAGGGTTTTCACA 3512 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 3511 AAGATCTGCATG 3500 >seq25936 Length=21514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || ||||| || ||||||||| ||||| ||||| Sbjct 2481 CCACCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCC 2422 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || || ||||| | || |||||||||||||| ||||| ||||| ||||| ||||| | | Sbjct 2421 GAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGG 2362 Query 41753 GG 41754 || Sbjct 2361 GG 2360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462090600473600