Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5150 132 1e-25 seq5776 86.0 1e-11 >seq5150 Length=29312 Score = 132 bits (146), Expect = 1e-25 Identities = 455/695 (65%), Gaps = 37/695 (5%) Strand=Plus/Plus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 14876 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 14935 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 14936 GTGCGACTCAATGTGGTGGAAAGCGTGCTGGGCCACGTAGGCGAAACGCATGGCAGGGTG 14995 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || ||| |||| | |||| | ||||| |||| ||| || || || Sbjct 14996 CTTCCACACCTGGCCGCTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 15055 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| |||| ||| |||| | | ||| || || ||| Sbjct 15056 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACCG 15114 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | || |||| || | | | || | ||| || |||||| | | || Sbjct 15115 AGATGTT---GTTGATCGACG----GCTTCGAGGCACCAGGGTACTTGTA-CGAGCAGTT 15166 Query 319282 CGT-AGCTTCATGA-TGGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTC 319337 || || |||| |||| || |||| |||| | | ||||| || ||||| Sbjct 15167 GGTCAGACGAATGATTGGCTTAC---CCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTC 15223 Query 319338 GGGGAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGG 319394 ||||| | || | | ||| || |||| || ||||||| | | ||||| Sbjct 15224 CGGGAAGATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCGGG 15280 Query 319395 ACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTC 319454 || || |||||||| |||||| || |||||||| |||||||||| || | || Sbjct 15281 CTTCTGCTCCACGAACTTGGACAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTC 15337 Query 319455 GTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCAC 319514 ||| ||||| || || || || ||||||||| ||||||||||| ||||| || | Sbjct 15338 GTAGTGGATGATGTTAGTACACACGTTGTCGAGGAAGCCGGAGTCGTGGGACACCATGAT 15397 Query 319515 GCACGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AACCACCTCACGTTAGACACA 319572 | | | |||| | | | ||||||| ||| || | ||| ||||| ||| Sbjct 15398 GGAGGTGACGTTGGGCACGCTCGTCAGGTAGTTC--TCGAGCCAAGCGACGTTCTTGACA 15455 Query 319573 GAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGT 319632 | ||||| || ||||| || || ||||| | | || ||||| ||||| ||||| Sbjct 15456 TCCAAGTGGTTCGTGGGCTCATCGAGCAGCAGAATGTCAGCCTTCAGCAGCATGGCACGC 15515 Query 319633 GCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAG 319667 | || |||||||||| ||||| || ||||| || Sbjct 15516 GACAGCTCGAGTTTCATCTTCCAACCACCGGACAG 15550 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 319857 GGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCC 319916 |||||| || || ||||||||||| |||| |||||||| || || || ||||| || Sbjct 15734 GGGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACC 15793 Query 319917 GTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAG 319976 ||| || || ||||||||||| |||| ||||| || ||| | || | ||||||||| Sbjct 15794 GTTGGGGCCGCACAGACCGTAACGGTGGCCGCGCTTGAGGCGAAGGCGGGCGTTGTTCAG 15853 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 320024 ||||| | ||||| || || || || || || || | |||||||| Sbjct 15854 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGATC 15901 >seq5776 Length=18420 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| || |||| ||||||||||||| Sbjct 7998 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCTAGTGGCGGTGGGTTCGAGCC 8057 Query 165771 CCACG 165775 ||||| Sbjct 8058 CCACG 8062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057714448110290