Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2518 140 3e-28 seq544 125 7e-24 >seq2518 Length=24447 Score = 140 bits (154), Expect = 3e-28 Identities = 308/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | ||||| || | |||||| || ||||| || | Sbjct 23502 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 23443 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || |||||| || || ||||| | ||| || || | | |||||| || | Sbjct 23442 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 23383 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || ||||| || | || ||||| | | || || | ||||| || | | Sbjct 23382 AGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 23323 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | ||| ||||| || Sbjct 23322 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCA 23264 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||||| | | | || || ||| ||| | || ||||| |||||||| || Sbjct 23263 ATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGC 23204 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 23203 GAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCC 23144 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCGT 17372 |||| | || || || | ||| |||| || || || |||||||||||||||| Sbjct 23143 TCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCGT 23086 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||| || ||||| || |||| | ||||| ||||| Sbjct 23085 CGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 23049 >seq544 Length=17931 Score = 125 bits (138), Expect = 7e-24 Identities = 307/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 7005 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 7064 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| |||||||| || || ||||| | ||| || || | | ||| || || | Sbjct 7065 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCG 7124 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCG-CGTCT 17134 | ||||| || || || || | || ||||| | | || || | ||||| || | | Sbjct 7125 AGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC 7184 Query 17135 TTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | || || | ||| | ||| ||||| || Sbjct 7185 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCA 7243 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCT--GTAGGTCGATTATATACGTATCGATGAGTA 17252 || || || | | | || ||| ||| || | || ||||| |||||||| | Sbjct 7244 ATAGCGCGCAACAGGTGGTTCTTCTCCATCGTA--TCCTTGATGTACGTGTCGATGAGCA 7301 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 | ||| | |||| ||| |||||||| ||||| ||||| || ||||| ||||| || | Sbjct 7302 GCGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCG 7361 Query 17313 CTTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCC 17370 | || | | || ||||| | ||| |||| || || || |||||||||||||| Sbjct 7362 CCTCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 7419 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||||||| ||||| || |||| | ||||| ||||| Sbjct 7420 GTCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 7458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517493308486440