Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2518 113 5e-20 seq544 107 2e-18 >seq2518 Length=24447 Score = 113 bits (124), Expect = 5e-20 Identities = 304/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || |||||||| || | || || || | |||||| || ||||| || | Sbjct 23502 ACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGA 23443 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 23442 AGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 23384 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || ||||| |||| || || || | | || |||| ||||| | || | Sbjct 23383 GAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 23324 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | ||||| | || | || ||||| || Sbjct 23323 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTC 23265 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 ||||| | || | || || ||| || | || ||||| || || || | Sbjct 23264 AATGGCTCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAG 23205 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||||| || ||||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 23204 CGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGC 23145 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||||| | || || || | || |||| ||||||||||| |||||||| ||| Sbjct 23144 CTCCGGCACCTGCACCTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 23087 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || ||||| || || |||| | |||||| ||||| Sbjct 23086 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 23049 >seq544 Length=17931 Score = 107 bits (118), Expect = 2e-18 Identities = 303/458 (66%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || |||||||| | Sbjct 7005 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGA 7064 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 7065 AGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCC 7123 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CATC 16371 || ||||| || || ||||| | || || || | | || |||| ||||| | || | Sbjct 7124 GAGAAGAAGATGCCTTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACC 7183 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 || | ||| || | |||| | || || | || | || ||||| || Sbjct 7184 CGCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTC 7242 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || |||| | | || ||| |||| | || ||||| || || || | Sbjct 7243 AATAGCGCGCAACAGGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAG 7302 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || | ||| |||||||| ||||| ||||| || || |||||||| || || Sbjct 7303 CGAGTAGACCTCGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGC 7362 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACCG 16609 ||| | | || ||||| | || |||| ||||||||||| |||||||| ||| Sbjct 7363 CTCGGGCACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 7420 Query 16610 TCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 || || || || || || |||| | |||||| ||||| Sbjct 7421 TCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATGAA 7458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511362727967560