Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq6666 244 1e-59 >seq6666 Length=19192 Score = 244 bits (270), Expect = 1e-59 Identities = 488/710 (69%), Gaps = 15/710 (2%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| |||||||| || || ||||| || || || | ||||||| || || || Sbjct 10634 AGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCACCA 10693 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| | ||||| | || || |||| || | ||||||| | ||||||||| || || Sbjct 10694 GGCTTCAACCCCGTCACCTGCGCCACCA-GTCGCGTCAGCAACGCGTAGCTGGCGATATT 10752 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||| ||||| | ||| || Sbjct 10753 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCC 10812 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | |||||| ||||| || ||||| | || || Sbjct 10813 GTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATTTCATTGAGATC 10872 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCC-TCCTGCTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||||||||| || | || |||| || || | || |||||| | | || Sbjct 10873 CGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTC-GGGTTCGTGCGCAGCTTGT 10931 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 || | ||| |||||||||||||||||| | ||| || | | || | |||| | Sbjct 10932 GAATAACCTCCGCGAGCTGGTCCACGCCCTGGTTCGTGTAGTC-GGCATGCATGTCCGTG 10990 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| |||||| ||||||| ||||||||| |||||||| || || || || || || Sbjct 10991 TACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGGTCCGAGATCGCCCACTTCT 11050 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | ||| || | | | || | ||||| || || ||| |||||||||| | | Sbjct 11051 CGCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGG 11110 Query 146161 ACGCCCCTC-GCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTC 146219 | | || || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 11111 ATGTCCTTCTGCTG-CAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCTC 11169 Query 146220 TTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCG 146276 || || || | |||||| || | |||||| || ||||| |||||| | | ||| Sbjct 11170 CTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGGGAACACGTTGTCCCT 11229 Query 146277 CAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGTCC 146334 || | || ||| | || ||||| ||||| ||||| ||||||| | ||| Sbjct 11230 TAGACTGAACCGCATCTGCGCGCCAAAGACCGACAGCGTGCCTGTTCCCGTCCGGTCTCC 11289 Query 146335 CCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 | || ||| ||| | | |||||||| | || || ||||||||| Sbjct 11290 GCGCTTCGCTCCC--TGGGTCAGGATCTTGCGGATCAAGTCGAGGTACTG 11337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590017180115320