Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq544 428 5e-115 seq2518 423 2e-113 seq5738 163 3e-35 seq5736 136 4e-27 seq5227 136 4e-27 seq3557 102 8e-17 >seq544 Length=17931 Score = 428 bits (474), Expect = 5e-115 Identities = 587/812 (72%), Gaps = 20/812 (2%) Strand=Plus/Minus Query 116593 GAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAA 116652 |||||| |||||||||| | ||| | || || | | ||| |||||| |||||||| Sbjct 7609 GAACCCGAACCGGTTCGTGCTGTTCTCGATCCAGGAGCACGACGTGTGGCAGATGTACAA 7550 Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 ||||||||||| ||||||||||| | ||||||| |||||||| | ||| || ||| Sbjct 7549 GAAGGCCGAGGCCTCGTTCTGGACGGCCGAGGAGTTGGACCTGGTGCACGACCTGAACGA 7490 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||| || ||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 7489 CTGGCAGAAGCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGC 7430 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || |||||||||||||| |||||||| |||| | | ||| | || |||||||| Sbjct 7429 GGCGAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGCAACGAAGTGCAGGT 7370 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | |||||||||| |||||||||||||| ||||||||||| |||||| | ||| | || | Sbjct 7369 GCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGGT 7310 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAA 116952 || ||| ||||||||||||||| | | || ||||||| || ||||| Sbjct 7309 CTACTCGCTGCTCATCGACACGTACATCAAGGATACGATGGAGAAGAACCACCTGTTGCG 7250 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG- 117011 ||| || |||||||| ||||||||||| ||||||| | |||||||| ||| || Sbjct 7249 CGCTATTGAGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGA 7190 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 || || | | | | | | | ||||| ||| |||| ||||| || || || ||| ||| Sbjct 7189 CCCGC-GGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCT 7131 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| |||||| ||| | |||| || ||||||||||| ||||||||||||||||||| Sbjct 7130 TCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCC 7071 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 ||| ||| ||||||||||||| | | |||||||| |||| ||||| || || Sbjct 7070 TGAGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCATGCACACGGACTTCGCGTGCC 7011 Query 117192 TGCTG---TTCAAGCATTTGGTGCAGCGA-----CCGAGCGCGGCGCGCGTCAGGGAGAT 117243 | || | ||||| |||| || | | ||||| || ||||| ||||| Sbjct 7010 TCATGTACTCCAAGC---TGGT-CAACAAACTTCCCGAGAGC----CGCGTGCACGAGAT 6959 Query 117244 CGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303 |||| || || ||| |||||||||| ||| | ||| ||||||| ||| || Sbjct 6958 CGTCCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCCCGTGGAGCT 6899 Query 117304 GCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGC 117362 | || | || | ||| | |||| || |||||||||||||| |||||| | |||| Sbjct 6898 CATCGGCATGAACT-CGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGC 6840 Query 117363 TGCTCGAGCTGGTCGGCGCCAAGCACTACAAC 117394 || | ||||| || |||||| ||||||| Sbjct 6839 TGTACTCGCTGGGCGTGCCCAAGCTCTACAAC 6808 >seq2518 Length=24447 Score = 423 bits (468), Expect = 2e-113 Identities = 620/863 (72%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| |||||||| |||||||||| | ||||| || || | | ||| Sbjct 22881 GAGCCGTTCCTGGTGGAGAACCCGAACCGGTTCGTGCTGTTCCCGATCCAGGAGCACGAC 22940 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 |||||| |||||||| ||||| ||||||||||||||||| | ||||||| ||||||| Sbjct 22941 GTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTCTGGACGGCCGAGGAGCTGGACCTG 23000 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || ||||||| | | ||| ||||||||||| ||||||||||| Sbjct 23001 GTGCACGACCTCAAG-GACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCA 23059 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 |||||||||||| ||||| ||||||||||||||||| |||||||| |||| | | || Sbjct 23060 CGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTT 23119 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | |||||||||||| | |||||||| ||||||||||| || ||||||||||| || Sbjct 23120 CAGCAATGAGGTGCAGGTGCCGGAGGCGCGCTGCTTCTACGGTTTCCAGATCGCCATCGA 23179 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | |||||||| |||| ||| ||||||||||||||| | ||| ||| Sbjct 23180 GAACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACGCGGTGGA 23239 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 |||| || || || ||||| |||||||| ||||||||||| |||| || | || Sbjct 23240 GAAGGACCACCTGCTGCGAGCCATTGAGACGATCCCGTGCGTCAAGAAGAAAGCGCACTG 23299 Query 116995 GGCGCTGCGCTGGATCG-CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCG 117053 |||||| ||| || || || | | | | | | | ||||| ||| |||| |||| Sbjct 23300 GGCGCTCAAGTGGTGCGACCCGC-GGGTGTCGTCGTACCCGGAGCGTCTGCTGGCGTTCG 23358 Query 117054 CGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAAC 117113 | || || |||||| ||||||| |||||| ||| | |||| || ||||||||||| | Sbjct 23359 CTGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGC 23418 Query 117114 GCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGC 117173 ||||||| ||||| || |||| ||| |||||||| ||| | | || ||||| ||| Sbjct 23419 GCGGCCTGATGCCTGGTCTGAGCTTCTCGAACGAGCTGATCAGCCGCGATGAGGGCATGC 23478 Query 117174 ATTGCGACTTTGCCTGTTTGCTG---TTCAAGCATTTGGTG---CAGCGACCGAGCGCGG 117227 | ||||| ||||| | || | ||||| ||||| ||| ||| | | | Sbjct 23479 ACACGGACTTCGCCTGCCTCATGTACTCCAAGC---TGGTGAACAAGCTGCCG-GAGAGC 23534 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 |||| | || |||||||| ||| || || |||||||||| ||| | ||| Sbjct 23535 CGCGTG-CA-CGAGATCGTGCACGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACT 23592 Query 117288 CGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTC 117346 | ||||| ||| ||| | || | || | || | ||||| || ||||| |||||| Sbjct 23593 CCCTGCCTGTGGAGCTGATCGGCATGAACT-CGTCGCTGATGTGCCAGTACATTGAGTTC 23651 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 || |||||| | |||||| | ||||| || | ||| ||||||| || |||||| Sbjct 23652 GTGGCCGACCGCCTGCTGTACTCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCG 23711 Query 117407 CTGGACTTTATGAACCTCATCTC 117429 | |||| ||| || | ||||| Sbjct 23712 TTCGACTGGATGGACATGATCTC 23734 >seq5738 Length=44011 Score = 163 bits (180), Expect = 3e-35 Identities = 177/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||||| |||||||| |||||||| ||||||| || | Sbjct 34283 AAGATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 34342 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| | || |||| ||||| ||||| ||||| | || Sbjct 34343 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGA 34401 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| |||||||| |||| ||||| || | |||||| Sbjct 34402 CCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTA 34461 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| ||||| || | || ||| Sbjct 34462 CAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 34513 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| |||||||| ||||||| || | | Sbjct 34514 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 34573 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| | ||| | || |||| ||||| ||||| ||||| | ||||| Sbjct 34574 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 34632 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||| || | ||||||||| Sbjct 34633 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACAA 34692 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | |||||||| || ||| ||||| || | || ||| Sbjct 34693 CATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 34741 >seq5736 Length=80658 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| || ||||| | ||||| || | Sbjct 56612 AAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCG 56671 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| ||||| |||| || | ||||| ||||||||||| | || Sbjct 56672 TCGGACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGA 56730 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| ||| ||||| ||||| || |||| ||||| || | |||||| Sbjct 56731 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTA 56790 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | || || || || ||| |||| || | || ||| Sbjct 56791 CAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGC 56842 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || ||||| | ||||| || | | Sbjct 56843 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 56902 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | |||| ||||| |||| || | ||||| ||||||||||| | ||||| Sbjct 56903 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCA 56961 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| ||||| || | ||||||||| Sbjct 56962 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACAA 57021 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | || || || || ||| | ||| Sbjct 57022 CATCCAGAAGGAGTCGACTCTCCACCTGGTGCTTCGC 57058 >seq5227 Length=11794 Score = 136 bits (150), Expect = 4e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | ||||| || | || Sbjct 2387 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 2328 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | | | ||||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 2327 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 2268 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 2267 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 2208 Query 40870 ATCCAGAAGG 40879 |||||||||| Sbjct 2207 ATCCAGAAGG 2198 >seq3557 Length=22309 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 7939 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 7998 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| ||||||||| || ||| | || || | Sbjct 7999 ACTCTTTCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTTCGTCTGCGT 8058 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 8059 GGTGGTGGC 8067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515167143540080