Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq21 188 6e-43 seq5736 138 1e-27 seq5738 123 2e-23 seq5227 93.3 4e-14 >seq21 Length=30282 Score = 188 bits (208), Expect = 6e-43 Identities = 437/655 (67%), Gaps = 14/655 (2%) Strand=Plus/Minus Query 133076 TTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTT 133135 |||||||||||| |||||||| | | |||||| || | || || | | | || Sbjct 4196 TTTGATCTCCCACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATGGCCTTGACCTT 4137 Query 133136 CTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAG 133195 ||||||||| ||| | || || |||| |||||||| || || || | ||| | || Sbjct 4136 CTGCACGGAGCCGCTGTCATTCAGGATCTGGTTGCGCACGTCGGGCGTCCAGATGCCCAG 4077 Query 133196 ATCGATTAGCGCTTTGACGAGATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGC 133254 ||||| ||| | || | || |||| |||||| | | |||| ||||||||| || |||| Sbjct 4076 CTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAA-CTCGCCGGCCAGCACGC 4018 Query 133255 GTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCG 133314 | | | || | || |||||| |||| |||| || |||||||||||||| ||||| | Sbjct 4017 GGCGGTTGTACATGTTGGACGTGTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGG 3958 Query 133315 CCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTA 133374 |||||| || ||||||||| ||||||| || ||||| | | ||||| |||| | | Sbjct 3957 CCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAGCGAGTTGCGCAGGCCGTGCTTGATCA 3898 Query 133375 TGTTGCACTGCAATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGT 133434 ||| || || | ||||| |||||| | || |||| || | Sbjct 3897 CGTTCTCCTTCAGCGCCGCCCAGTTCCACAG---GCCCGA-----CGACGGGGT----GA 3850 Query 133435 CGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCAT 133494 || | | ||| || || || || ||| |||| |||| | || | ||| || | Sbjct 3849 CGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCGGCGAGCCCTGGAACGTCTCGT 3790 Query 133495 AGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTT 133554 | || ||| ||||| | ||| | | ||||| ||| ||| |||| ||||| | Sbjct 3789 ACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTCCATAGCCGCATAGTAGATGGTCT 3730 Query 133555 CCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAA 133614 | ||| | ||||| | ||| || ||||| ||| | |||| || | || | Sbjct 3729 CGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCTCTCGAACGCGAAGTTCATGAGGA 3670 Query 133615 CAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCC 133674 |||||||| || | ||||| | ||||| ||||||||| || || | ||| | Sbjct 3669 TGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCGATGGGGCGGTGGCGCATGTTGGACT 3610 Query 133675 TCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 | || ||||||| ||| |||| |||||||||||||| |||||| || ||||| Sbjct 3609 TGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATGACCTTGTTCAGGTTGCG 3555 >seq5736 Length=80658 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||||||| ||||| ||||| Sbjct 57052 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 56993 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 56992 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 56933 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||||| || || | |||| | ||||| ||| || || | || | ||| || Sbjct 56932 GATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTT 56873 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 56872 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 56842 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||||| || || |||||||| ||||||| ||||| || Sbjct 56827 CAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTC 56768 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 56767 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 56708 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || ||||| || || | |||| | ||||| ||| || || | || | ||| Sbjct 56707 CTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGT 56648 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || || |||||||| Sbjct 56647 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56615 >seq5738 Length=44011 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| |||||| Sbjct 34740 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 34681 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 34680 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 34621 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| || || || || | |||| | ||||| ||| || Sbjct 34620 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 34561 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || | || ||||| ||||| || || || || ||||||||| Sbjct 34560 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 34513 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || ||||| ||| | || ||||| || || |||||||| |||||| Sbjct 34512 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 34453 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| || |||||||| || || || Sbjct 34452 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 34393 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| || || || || | |||| | ||||| ||| || Sbjct 34392 ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACG 34333 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | || ||||| ||||| || || || || |||||||| Sbjct 34332 TCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34286 >seq5227 Length=11794 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| || | ||||| ||||||||||| || || ||| |||| Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||||| || || || | || Sbjct 2260 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2319 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 2320 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2379 Query 118731 ATCTGCATG 118739 ||||||||| Sbjct 2380 ATCTGCATG 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433787662689436