Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq5227 131 2e-25
seq5738 127 2e-24
seq5736 123 3e-23
>seq5227
Length=11794
Score = 131 bits (144), Expect = 2e-25
Identities = 145/191 (76%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | || || || |||| || |||||||| || ||||| |
Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| || ||||||||||| | ||| | || |||||||||| |||||| || |||| | | |
Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 2316
Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
|| | ||||| || ||||| || | ||||||||| |||||||| || ||||| |||
Sbjct 2317 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2376
Query 43173 AAGATTTGCAT 43183
||||| |||||
Sbjct 2377 AAGATCTGCAT 2387
>seq5738
Length=44011
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| || |||||| || || ||||| || ||| || || ||
Sbjct 34500 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 34441
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||| | ||| | | |||||||
Sbjct 34440 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTG 34381
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| || || || || | ||| | | | || ||| || ||||| |||| ||||||
Sbjct 34380 TCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGAT 34322
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||| |||||||| |||||||| || ||||| ||||| ||
Sbjct 34321 GGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTT 34283
Score = 125 bits (138), Expect = 8e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| |||| || |||||| || || ||||| || ||| || || ||
Sbjct 34728 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 34669
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||| | ||| | | |||||||
Sbjct 34668 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTG 34609
Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147
||| || || || || | ||| | | | || ||| || ||||| |||| ||||||
Sbjct 34608 TCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGAT 34550
Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||| |||||||| |||||||| || ||||| |||||
Sbjct 34549 GGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514
>seq5736
Length=80658
Score = 123 bits (136), Expect = 3e-23
Identities = 161/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| || | || |||||| || || ||||| || ||| || || |
Sbjct 56830 ACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCC 56771
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||
Sbjct 56770 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 56711
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| ||||| |||| ||| | | | || ||| || ||||| || | |||||
Sbjct 56710 GTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 56652
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
| || ||||| || || ||||| || ||||| ||||| ||
Sbjct 56651 TCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 56612
Score = 120 bits (132), Expect = 3e-22
Identities = 144/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||| || || |||| || |||||||| || |||||
Sbjct 57034 CTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 56975
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | ||| | || |||||||||| ||| ||||| |||| |||
Sbjct 56974 GATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGT 56916
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| || ||||| || | |||||| || ||||| || || ||||| |
Sbjct 56915 TGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCA 56856
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 56855 CGAAGATCTGCAT 56843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571759824979240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |