Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5736 163 2e-35 seq5738 154 1e-32 seq5227 136 3e-27 seq3557 91.5 1e-13 >seq5736 Length=80658 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | ||| || ||||| |||||||||||| | Sbjct 56841 CCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 56782 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| || | ||||||||| ||||| || || ||||||||||| | |||| Sbjct 56781 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56722 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||||||||| | | | | ||||| || | || || || Sbjct 56721 -ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 56663 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| |||||| || ||||| || || || ||||| |||||||||||| Sbjct 56662 GTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 56614 Score = 158 bits (174), Expect = 8e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| || | ||||||||||| | ||| || ||||| |||||||||||| Sbjct 57070 TCCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 57011 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 |||| ||| |||| || | ||||||||| ||||| || || ||||||||||| | ||| Sbjct 57010 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 56951 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||||||||| | | | | ||||| || | || || | Sbjct 56950 G-ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCA 56892 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||| |||||| || ||||| || || || ||||| ||||||||||| Sbjct 56891 CGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843 >seq5738 Length=44011 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | || || ||||| |||||||||||| | Sbjct 34512 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 34453 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 34452 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 34393 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||||| | | | | ||||| || | || || || Sbjct 34392 -ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 34334 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||| | ||||||||| ||||| || || || || || |||||||||||| Sbjct 34333 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATC 34285 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||||||| | || || ||||| |||||||||||| | Sbjct 34740 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 34681 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || || ||||||||||| | |||| Sbjct 34680 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGG 34621 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||||| | | | | ||||| || | || || || Sbjct 34620 -ATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 34562 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| | ||||||||| ||||| || || || || || ||||||||||| Sbjct 34561 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514 >seq5227 Length=11794 Score = 136 bits (150), Expect = 3e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||| || ||| ||| |||| || | ||||||||| ||||| || Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259 Query 34262 AGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 || ||||||||||| | |||| | || ||||||||| || || ||||| | || | | Sbjct 2260 AGGCGCTGCTGGTCAGGCGGG-ATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTC 2318 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || |||| || || ||||||| ||||||||| ||||| || || || |||||||| Sbjct 2319 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 2378 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 2379 GATCTGCAT 2387 >seq3557 Length=22309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||||| | || || || ||||| ||||||||||| || Sbjct 8063 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 8004 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| ||||| || || ||||||||||| Sbjct 8003 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 7951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323040173672480