Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq21 197 3e-45 seq6644 141 2e-28 seq544 120 7e-22 seq2077 104 5e-17 seq2518 100 6e-16 >seq21 Length=30282 Score = 197 bits (218), Expect = 3e-45 Identities = 1086/1711 (63%), Gaps = 92/1711 (5%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| ||| |||||| ||||||||| | || |||| |||||||| ||| |||| Sbjct 2135 CATGTACGTCATCAAGCGCGACGGGCGCCAGGAGGACGTCAAGTTCGACAAGATCACGGC 2194 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGAT--CATGTGGCCATC 248535 |||||||| |||||||| || || || | || ||| ||| || ||| | ||| Sbjct 2195 GCGCATCACCAAGCTCTGCTACGGGCTCAACCCGGACTACGTGGACGCCATCAAG--ATC 2252 Query 248536 GCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTA 248595 | ||||| || | ||||||| ||| | || || || || | || |||||| | Sbjct 2253 TCGCAGAAGGTCGTGGCGGGCGTGTACCCGGGCGTCACCACCTCGGAGCTGGACGAGCTG 2312 Query 248596 GCTGCGGAGACGGCGGCGTA-CATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCG 248653 || || ||||| || ||||| || || ||| ||||| || | ||| ||||| | Sbjct 2313 GCGGCCGAGACCGCCGCGTATCAGAGCAC--GCAGCACCCGGATTTCTCTAAACTGGCGG 2370 Query 248654 GGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGG 248713 || || |||||||| | || ||||| | || || || |||| ||| | ||| | Sbjct 2371 CAAGAATTGCCGTCTCTAACCTGCACAAGAACACCAACAAGGTGTTCAGCGACAACATCG 2430 Query 248714 CTGACCT--------ACATGC-CTATGGGATGG------------------TCGCCGATG 248746 | | | |||| | | | || || |||| |||| Sbjct 2431 AGGTCTTCCACAAGAACATCCACGAGAAGACGGGCGCGGCGGCCCCGCTCATCGCTGATG 2490 Query 248747 ACGTCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACG 248803 |||| || | |||||| ||| |||| | | ||| || || || | ||| Sbjct 2491 ACGTATACGAGATCGTCATGCAGCACAAGGACGAGCTCA---ACTCGGCCATCATCCACG 2547 Query 248804 GCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCA 248863 | || || |||||||| | ||||| ||||| ||||| ||| || ||| || Sbjct 2548 ACCGCGACTTCGAGTACGACTACTTTGGCTTCAAGACGCTCGAGCGCGGCTACCTCTTCC 2607 Query 248864 AAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGA 248923 | | |||||| | ||||| || ||||| ||| | ||||| ||||| | || | Sbjct 2608 GCGTGAACGGCAAGGTGGTGGAGCGCCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCA 2667 Query 248924 TTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGA 248983 | |||||| ||||| || || |||||||||||| ||| || | Sbjct 2668 TCCACAAGAGCGACATTAAGGCCGCCCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTT 2727 Query 248984 TGACACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGC 249039 | || || || || ||||| || || |||||||| || || | |||| ||| Sbjct 2728 TCACGCACGCGACCCCGACACTGTTTAACGCCGGCACGCCGCGCCCACAA----CTGTCG 2783 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 || ||||| || | |||||||| |||||||| | || ||||| || |||||||| || Sbjct 2784 TCCTGCTTCCTGTTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAG 2843 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA 249159 ||| ||| || || || | || || || ||||| || | | ||||||||| Sbjct 2844 CAGTGCGCGTGCATCTCCAAGTGGGCCGGGGGTATCGGCATCAGCATGCACAACATCCGC 2903 Query 249160 GCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCCTCC 249217 || | | | |||||| || || || || || || |||| ||| | ||| | | Sbjct 2904 GCCACGAATAGCTACATCCGTGGCACGAACGGC-TC-GTCCAATGGCATCATCCCCATGC 2961 Query 249218 TTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGT 249274 | || || | ||| ||| | | | | |||||| ||| || || ||||| | Sbjct 2962 TGCGCGTGTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGAGGCAAGCGCAAGGGCT 3021 Query 249275 CGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAA 249334 |||||||||| || | || |||||||| || | || |||||||||||| || | Sbjct 3022 CGTTCGCCATCTACCTTGAGCCCTGGCACGCGGACGTGTTCGAGTTCCTGGACCTGCGCA 3081 Query 249335 AGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCG 249394 ||||| ||||||||||||| | ||||| ||||| ||||||| |||||||| ||| Sbjct 3082 AGAACCACGGCAACGAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCG 3141 Query 249395 ACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACG 249454 | |||||||| | || ||||| | ||| | |||| || | | || || | Sbjct 3142 ATCTGTTCATGAAGAGGGTGGAGGCCAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAG 3201 Query 249455 CCCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAA--TACGA 249512 |||| | ||| ||| |||| || || || | ||| || |||| ||||| Sbjct 3202 CCCCTGGACTCTACGAGTGCTGGGGCGAGGAGTTTGA--GACCCTTTATGAAAAGTACGA 3259 Query 249513 ATCCAACGGCATCG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGT 249566 | || || ||||||| ||||| || | | || || || | | | Sbjct 3260 GAAGGAGGGACGCGCGCGCAAGACGATCAACGCGCAGCAGCTGTGGTTCGCCA---TCCT 3316 Query 249567 GGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCA 249625 ||| | ||||| ||||| || | ||| | | || | | ||| |||||| |||| | Sbjct 3317 GGACGCGCAGATCGAGACGGGCGTGCCCT-TCATGCTCTACAAGGACGCGGTCAACCGGA 3375 Query 249626 AGAGTAACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTG-TGCAGAGGTGATT 249684 || ||||| | | | || || || |||||||| || | || ||| |||||||| Sbjct 3376 AGTCGAACCAGCAGAACCTCGGCACGATCCGCTCCAGCAACTTGTGCTGC-GAGGTGATG 3434 Query 249685 CAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGG 249744 | ||| ||||| || ||| | ||||| ||||||||| || || | || Sbjct 3435 GAGTACACGTCCCCCGACGAGGTGGCCGTGTGCAACCTG----GCCTCGGTGGCGCTGCC 3490 Query 249745 CACGTGAG-GGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGCGAAACAGGC 249803 || || | || ||| | |||||||| | || || || || || | ||| Sbjct 3491 CAAGTTTGTGGAGGAGGGCGTGTTCGACTACCAGAAGCTCTAC--GA-GGTCACCAAGGT 3547 Query 249804 GATCA---AAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCT---TGAGGAATG 249857 |||| ||||| |||||||| || || ||||| | |||||| | |||| | Sbjct 3548 CATCACGCGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTGGCCGAGGCGCG 3607 Query 249858 CAGGTTGTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGT 249917 || |||||||||| ||||| || || | ||||| |||| || |||| Sbjct 3608 CA---AGTCCAACATGCGCCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGC 3664 Query 249918 CTACATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGG-CAGCGACGCTAAATAAACAGA 249976 | ||| | ||| ||| | |||||| ||||||| | |||| ||| || || ||| Sbjct 3665 GTTCATCCTCATGAACTTCGCGTTCGAGAGCGAGGAGGCCCGCGA-GCTCAACAAGAAGA 3723 Query 249977 TTTTCGAGACCATCTATCACGGGAGCGTCGAGGCGTCCATCGAAAGGGCCAAGATCGACG 250036 | |||||||||||||| | | | | ||| ||||||| || | |||||| || Sbjct 3724 TCTTCGAGACCATCTACTATGCGGCTATGGAGACGTCCATGGAGATCGCCAAGGAGCTCG 3783 Query 250037 GACCATACGAGAGTTTTCAGGGGTCGCCCGC 250067 | || ||||||| || ||||| ||||| || Sbjct 3784 GCCCGTACGAGACGTTCCAGGGCTCGCCGGC 3814 >seq6644 Length=28051 Score = 141 bits (156), Expect = 2e-28 Identities = 268/385 (70%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || || ||||| ||| |||| || || ||||||||||||||||| ||||| |||| Sbjct 16498 CTGCCACACTTGCTCTTCTACGGGCCCCCAGGAACAGGCAAGACGTCCACCATTGTGGCA 16557 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAG--AGAGCG--CG--TGCTCGAGCTG 254114 ||| || || || ||| || || | | ||| || || | || |||||| Sbjct 16558 GTGGGGCGCCAGCTCTTCGGCCCGG---ACTTCCGCAAGAACGGCCGATTCCTAGAGCTG 16614 Query 254115 AACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAG 254174 ||||| || ||||| || || | | || |||||||| ||| | |||| ||| || || Sbjct 16615 AACGCGTCGGACGACCGAGGCATCAAGGTGGTCCGCGAGAAGGTTAAGAGCTTCGCCCAG 16674 Query 254175 ATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAG 254234 | ||| | | ||| | | || || || |||||| || | | || || ||| Sbjct 16675 GGCGCCATTA-GCAGCGCCAGCG-GACTC-CCTCCCTTCAAGATCATCGTGCTCGATGAG 16731 Query 254235 GCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCC 254294 || ||| ||||||||| |||||||||||| || || || || | |||||||| ||||| Sbjct 16732 GCTGACTCCATGACGGGCGACGCGCAGTCGGCGCTGCGTCGCATGATGGAGAACTACTCC 16791 Query 254295 GTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGG 254352 |||||||| || ||||| | || |||||||| |||| ||||||| || ||| Sbjct 16792 AAGGTGACGCGCTTCTGCCTCATCTGTAACTACGTGAGTCG--CATCATCGAGCCTGTGG 16849 Query 254353 CTTCTCGGTGCGCCAAGTTTCGATT 254377 | || || || |||||||| || || Sbjct 16850 CCTCCCGATGTGCCAAGTTCCGTTT 16874 >seq544 Length=17931 Score = 120 bits (132), Expect = 7e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 6713 ACGCCGGCCTTCGAGTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 6772 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTAC-CCCAG 157362 || |||||||||||||| ||||| ||||| | |||||| | |||| | || ||||| Sbjct 6773 GAGATCATGTCCATCCAGTCGAAGGGGTTCTTGACGTTGTAGAGCTTG-GGCACGCCCAG 6831 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGAT 157422 | || |||| | ||| ||||| |||| |||||||| |||| | || | | || Sbjct 6832 CGAGTACAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCAT 6891 Query 157423 ACCGATGAGCGCGACGGGAAGCG 157445 ||||||||| | ||||| |||| Sbjct 6892 GCCGATGAGCTCCACGGGCAGCG 6914 >seq2077 Length=16946 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || || |||||||| ||||| |||||||||||| | | | Sbjct 8847 ATGGCGCAGCGGCTCTGGATGGGCTCGATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 8906 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||||||||||| |||| | | |||||| | || ||||||||||| || | | Sbjct 8907 AACCGCGTCGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGCTGGGCCGCGGCC 8966 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||||||||| |||||||| || | || ||||| Sbjct 8967 GTCATCGAGTCGGCCTCGTCCAGGATCACGATCTT 9001 >seq2518 Length=24447 Score = 100 bits (110), Expect = 6e-16 Identities = 122/160 (76%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| |||| ||||||| |||| | ||||| || ||||||||||| ||||| || Sbjct 23794 ACACCGGCCTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGC 23735 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT-GGCGCAGTTGTACACCTTGTCG-TAC-CCC 157360 || |||||||||||||| ||||| ||||| ||| |||||| | || ||| || ||| Sbjct 23734 GAGATCATGTCCATCCAGTCGAACGGGTTCTTCGC-GTTGTAGATCT--TCGACACGCCC 23678 Query 157361 AGCTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 ||| || |||| | ||| ||||| |||| ||||||| Sbjct 23677 AGCGAGTACAGCAGGCGGTCGGCCACGAACTCAATGTACT 23638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073655197060544