Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq21 107 4e-18 >seq21 Length=30282 Score = 107 bits (118), Expect = 4e-18 Identities = 186/265 (70%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 94782 GATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAAT 94841 |||||||| || || || |||||||||| || || ||| || || || || || Sbjct 2885 GATGCCGATACCCCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGAT 2826 Query 94842 ACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGA 94900 ||||||||| || || || | | ||| |||||||| || || ||||| ||| | | Sbjct 2825 GCCCTCAATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGG 2766 Query 94901 CTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGAT 94960 | || || ||||||||||| |||| || || || ||| | | ||||||||| | Sbjct 2765 C-GTGCCGGCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCT 2707 Query 94961 CATATGTTTCAATGACAGATTTGATGTCTGATCC-GTGAATGCCGACAGCCACACGCATA 95019 | || || || | | | | || ||||| | || ||| ||||| | ||||| |||||| Sbjct 2706 CGTACGTCTCGAGGGCGGCCTTAATGTC-GCTCTTGTGGATGCCCAGCGCCACGCGCATA 2648 Query 95020 ATCATGTCCTGAGGGCGCTCAACCA 95044 ||||| | ||| |||||||| |||| Sbjct 2647 ATCATCTGCTGCGGGCGCTCCACCA 2623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989481515279265