Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq6666 203 3e-47 >seq6666 Length=19192 Score = 203 bits (224), Expect = 3e-47 Identities = 412/607 (68%), Gaps = 36/607 (6%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || |||||||| || |||||||| || || | ||| ||||| || || Sbjct 10634 AGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGGACAAACTCACCA 10693 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || ||| ||||| || || || | ||| |||||| | |||||||||||||| || Sbjct 10694 GGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTG 10753 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||| ||||||| ||| || Sbjct 10754 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCG 10813 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 ||||||||| ||||| || || | ||| || || ||||| ||||| ||| ||| Sbjct 10814 TCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCATTTCATTGAGATCC 10873 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATC-GTGGG--------GCCGCCTGTTA 21215 || ||||||||||| ||| ||||| || || || || || || || ||| | Sbjct 10874 GCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGTGCGCAGCTTGTGA 10933 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || | || || || ||||||||||| ||||| | ||||| ||| | Sbjct 10934 AT---AACCTCCGCG------AGCTGGTCCACGCCCTGGTTCGTGTAGTCGGCATGCATG 10984 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC- 21334 || |||||| |||||||| || | ||||||||| ||||| || || || |||||||| Sbjct 10985 TCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGGTCCGAGATCGCCC 11044 Query 21335 ----CTCGCG---GCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGCGGGACCCGTGCG 21387 |||||| || |||| ||| ||| ||| | | | || || || | Sbjct 11045 ACTTCTCGCGATTGCAGTCCACGA----CTG----TCCAGATACTCCCGCGATCCATTGC 11096 Query 21388 CGTCCCAAATTTTTACGCCGCGGCGCGACAG-TTCGGTGGAGTCGGTGGAGCCCCTGATA 21446 ||||||| || | | | | || ||| | | | | || ||| || ||||| Sbjct 11097 CGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTC-GTGTCTCCACTGATG 11155 Query 21447 AACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGA 21506 |||||||||| ||||||| | ||||| | ||| ||||| | ||||| || | ||| || Sbjct 11156 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGCTTGGTCGTGAGCAGTGGG 11215 Query 21507 AACTCGT 21513 ||| ||| Sbjct 11216 AACACGT 11222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427733859117840