Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2518 87.8 2e-12 seq544 82.4 8e-11 >seq2518 Length=24447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| || | |||||||| ||||||| ||||| || || ||| | ||| || Sbjct 23613 GGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTAC 23672 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || | |||| ||| || ||| ||||| || | ||| ||| || Sbjct 23673 TCGCTGGGCGTGTCGAAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGATC 23732 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| ||||||||||||||| Sbjct 23733 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTAC 23780 >seq544 Length=17931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 52894 GGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATG 52953 ||||||||| |||| | |||||| ||||||||||||| || || ||| | ||| || Sbjct 6894 GGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTAC 6835 Query 52954 CAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATA 53013 ||| || ||| || ||| || | |||||||| | ||| ||| || Sbjct 6834 TCGCTGGGCGTGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACTGGATGGACATGATC 6775 Query 53014 TCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||||| ||||||| || ||||| ||||||| || |||||||||||| Sbjct 6774 TCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 6727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496013878933600