Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2518 203 5e-47 seq544 190 3e-43 seq21 136 6e-27 seq6666 114 2e-20 seq5162 104 3e-17 >seq2518 Length=24447 Score = 203 bits (224), Expect = 5e-47 Identities = 605/913 (66%), Gaps = 44/913 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| |||| || || Sbjct 22917 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCGTTC 22976 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | ||||| | || |||| || | |||| Sbjct 22977 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACC---TGACG 23033 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | | ||| || ||| Sbjct 23034 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATC 23093 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| ||| || | || |||| | | Sbjct 23094 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAGGTGCAGGTGCCGGAGGCGCGCT 23151 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | |||||||| ||||||| || | Sbjct 23152 GCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCGGAGGTGTACTCGCTGCTCA 23211 Query 125293 TTGACATGTACATT-----CGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGA 125347 | |||| |||||| |||| | || | | ||| |||| || || || Sbjct 23212 TCGACACGTACATCAAGGACGCGGTGGAGAAGG--ACCACCTGCTGCGA---GCCATTGA 23266 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| | |||| | || || || || |||| | | |||| ||| Sbjct 23267 GACGATCCCGTGCGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGT 23326 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| |||||| | || | ||| |||| ||||| || || |||||||||||||| ||||| Sbjct 23327 GTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTCGGG 23386 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | ||| ||| ||||||| ||||||||||||||||| || ||||| || |||| | Sbjct 23387 CTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTTCT 23445 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTC 125586 |||||| | || || || |||||| | ||| ||||| ||| || ||| Sbjct 23446 CGAACGAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGCCTGCCTCATGTACT 23505 Query 125587 GCAACTATCTGCGTCCCGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 ||| ||| | || ||| ||| || ||| || | | | || || Sbjct 23506 CCAAG---CTGGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATCGTG 23552 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGT-CAGCATGAT 125701 ||||||||||| || || || ||||| | ||| ||||| || || ||| |||| Sbjct 23553 CACGATGCCGTGACCATCGAGCACGAGTTCGTGCGCGACTCCCTGCCTGTGGAGC-TGAT 23611 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 |||||||||| ||| |||||| ||||||| ||||| ||||| || || || ||||| Sbjct 23612 CGGCATGAACTCGTCGCTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTA 23671 Query 125762 CGAGTTGATTG-GCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | | || | | || ||||| |||||||| ||||| || || || | ||| || | Sbjct 23672 CTCGCTGGGCGTGTCG-AAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGA 23730 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTA 125878 | || || |||| ||||||||||| ||||||||| || ||||||| | || || Sbjct 23731 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGC-- 23788 Query 125879 CGGTGTCGGTGTC 125891 |||||| |||||| Sbjct 23789 CGGTGTGGGTGTC 23801 >seq544 Length=17931 Score = 190 bits (210), Expect = 3e-43 Identities = 583/889 (66%), Gaps = 38/889 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| | ||| | | || ||| | ||| | |||||||| ||||| ||||||| || Sbjct 7590 CTGTTCTCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTC 7531 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | |||||| |||| ||| ||| | |||| Sbjct 7530 TGGACGGCCGAGGAGTTGGACCTGGTGCACGACCTGAACGACTGGCAGAAGC---TGACG 7474 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | ||| || ||| Sbjct 7473 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCGGCGAGCGACGGCATC 7414 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || |||| | | Sbjct 7413 GTGAACGAGAACCTG--GCCATGAACTTCAGCAACGAAGTGCAGGTGCCCGAGGCGCGCT 7356 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||| | || | ||||| || | Sbjct 7355 GCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACGCCGAGGTCTACTCGCTGCTCA 7296 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | |||| |||||| ||| || || || || || ||| || || ||| Sbjct 7295 TCGACACGTACATCAAGGATACGATGGAGAAGAACCACCTGTTGCGCGCTATTGAGACGA 7236 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | |||| | || ||||| || |||| | | |||| ||| ||| | Sbjct 7235 TCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTGTCGT 7176 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGT 125471 ||||| | || | ||| |||| ||||| || || || ||||||||||| ||||| | | Sbjct 7175 CGTACCCGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTCTCGGGCTCCT 7116 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | ||| ||||||| ||||||||||||||||| ||||||||||| |||| | ||| Sbjct 7115 TCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGCTTCTCCAAC 7057 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC---CAT--TCTACT----G 125582 ||| | || || ||||||||| | ||| ||||| || | | | |||| | Sbjct 7056 GAGCTCATCAGCCGCGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTCCAAG 6997 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTA 125642 | |||| | || ||||||| || | || | || || || || Sbjct 6996 CTGGTCAACAAACT---TCCCGAGAGCCG------CGTGCACGAGATCGTCC-----GT- 6952 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGAT 125701 || ||||| | || || || ||||| | ||| || || || || ||| | || Sbjct 6951 ---GAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCCCGTGGAGC-TCAT 6896 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 |||||||||| | ||| |||||| ||||||| ||||| ||||| || || || ||||| Sbjct 6895 CGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTGTA 6836 Query 125762 CGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCAT 125821 | | || | | |||| | ||||||| |||||| ||||| || | ||| || || Sbjct 6835 CTCGCTGGGCGTGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACTGGATGGACATGAT 6776 Query 125822 ATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || |||| ||||||||||| ||||||||| || |||||||| Sbjct 6775 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTAC 6727 >seq21 Length=30282 Score = 136 bits (150), Expect = 6e-27 Identities = 324/483 (67%), Gaps = 10/483 (2%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| ||||| | || || |||||||||||||| || || || | || ||||||| ||| Sbjct 3027 GCCATCTACCTTGAGCCCTGGCACGCGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 3086 Query 96966 TCTGGCTTTGAAGAGGCAC-GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTT 97024 ||| || | |||| | || | ||| |||| || || || |||||||| ||| | Sbjct 3087 CACGGCAACGA-GCTGCACCGCGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCT 3145 Query 97025 GTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACC 97084 |||||||||| | || | | | |||| | ||||| || | |||||| | | || Sbjct 3146 GTTCATGAAGAGGGTGGAGGCCAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCCCC 3205 Query 97085 CGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA 97144 || || | ||| ||||||||||| ||||||||| || || |||||| | || Sbjct 3206 TGGACTCTACGAGTGCTGGGGCGAGGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGA 3265 Query 97145 GGGCCG-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTC 97203 ||| || || |||||| || | || | | |||||| |||||| || || | Sbjct 3266 GGGACGCGCGCGCAAGACGA-TCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGC 3324 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || || | ||| ||||||||||| | || || || || |||| Sbjct 3325 AGATCGAGACGGGCGTGCCCTTCATGCTCTACAAGGACGCGGTCAACCGGAAGTCGAACC 3384 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTC---CAATCTGTGCACGGAAATTGTAGAGTACG 97320 | | || | ||||| ||| |||| ||| ||||| || | | |||||| Sbjct 3385 AGCAGAACCTCGGCACGATC---CGCTCCAGCAACTTGTGCTGCGAGGTGATGGAGTACA 3441 Query 97321 CCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAG 97380 | || || |||||| ||| || ||| ||||| ||||| |||||||||||||| | Sbjct 3442 CGTCCCCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGGTGGCGCTGCCCAAGTTTGTGG 3501 Query 97381 AGG 97383 ||| Sbjct 3502 AGG 3504 Score = 96.9 bits (106), Expect = 5e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACC-AAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||||| || |||||||| | || ||| | || | || || | |||||| | || Sbjct 4173 TACAAGACGGTGTGGGAGAT-CAAACAGAAGGCCGTGCTGGACCTGTCGGCCGACCGCGG 4231 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 | ||||||| |||||| || ||| |||| | || | ||||| || ||| ||| Sbjct 4232 CGCCTACATTTGCCAGAGCCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAA 4291 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTA 98215 | || ||||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| Sbjct 4292 GCTCACATCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGTACTA 4348 >seq6666 Length=19192 Score = 114 bits (126), Expect = 2e-20 Identities = 281/418 (67%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 || ||| ||||||||| || || || ||||| ||||||||| |||||| || |||||| Sbjct 11051 GAGAAGTGGGCGATCTCGGACCTGTCTACGGCTTCCAGTGGCGGCACTTTGGGGCCAAGT 10992 Query 70119 ATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCAT 70176 | ||| ||| | | ||||| || ||||| || || || | || || | || Sbjct 10991 ACACGGACATGCATGCC-GACTACACGAACCAGGGCGTGGACCAGCTCGCGGAGGTT-AT 10934 Query 70177 TGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGC 70236 | ||| || || || || || || | ||||||| ||| | ||||| || || Sbjct 10933 TCACAAGCTGCGCACGAACCCGACCGACCGACGGATCGTGCTGTCGGCGTGGAACCCGGC 10874 Query 70237 AGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACG 70295 ||| | | ||||||| || || ||||| ||| |||| || ||||| ||| | | Sbjct 10873 GGATCTCAATGAAATGGCGCTCCCGCCGTGCCACATGTTCTGC-CAGTTCTACGTGGCTG 10815 Query 70296 ATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCT 70355 | ||| | ||||| || ||||| ||| | ||||||||||| || || || || | Sbjct 10814 ACGGCGAGTTGTCCTGTCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGT 10755 Query 70356 TTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 | || || || ||||| | || |||||| || | || || | || || |||| Sbjct 10754 TCAATATCGCCAGCTACGCGTTGCTGACGCGACTGGTGGCGCAGGTGACGGGGTTGAAGC 10695 Query 70416 CGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 | ||||| || ||| |||||||| || ||||||||| | || ||| ||||||| Sbjct 10694 CTGGTGAGTTTGTCCACGTTATTGGCGATGCCCACGTGTATCTGAACCACGTCGAGCC 10637 >seq5162 Length=24284 Score = 104 bits (114), Expect = 3e-17 Identities = 222/326 (68%), Gaps = 12/326 (4%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| ||||||||||| || |||||| || || |||||||| | ||||||| Sbjct 10794 GAAGCCGTGGGTCAGGTGGCCCCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 10735 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| ||||||||||||||| || || Sbjct 10734 GCGCAGCAGAGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCCGAGTACGGCTGCACGTT 10675 Query 127563 CACTCCCCA---TTCGGACTCGTTCAAATTGAACGCTCTG-AGACATCGCTGCTGTGCTA 127618 || ||||| |||| ||| || | | | || ||| || |||||||| | Sbjct 10674 GACGCCCCACTTCTCGG---CGTCCAGGTCGTAGGC-CTGCAGCGCGCGCTGCTGGCACA 10619 Query 127619 GCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACC 127676 | | ||||| ||||| | |||||| || || ||||| ||| ||| ||| || Sbjct 10618 GGATCTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCC 10561 Query 127677 CTCCGAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAA 127736 ||| | |||||||||| | || ||||| | || ||| || || | | | || || Sbjct 10560 CTCGGCGTACTTGTTGGTCAGGCACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAA 10501 Query 127737 GTTTTCCGATGCGATCAACTCTAAGC 127762 ||| ||||| ||||| | ||||| || Sbjct 10500 GTTCTCCGAGGCGATGAGCTCTAGGC 10475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740984325231080