Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4038 174 1e-38 >seq4038 Length=37899 Score = 174 bits (192), Expect = 1e-38 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 ||| |||||| ||||| ||||| ||||| | | |||| || || | | || |||||| Sbjct 17907 CACACCCGTGCTGCCGAAGCCGCCGGCGCCACGTGCCGTGTCCTCGAT-CTCGTCCACCT 17965 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | | || ||| |||| |||| ||| |||||||| | |||||||| || Sbjct 17966 CCTGGATCTCCGGGTACGCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCT 18025 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || ||| || | | || ||||||||| | ||||||||||||||||||||||| Sbjct 18026 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 18085 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| |||||||| |||||| ||||||||| | ||||| ||| ||||||||||| | Sbjct 18086 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAG 18145 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGG 5766 | |||||||| ||||||| || ||||| Sbjct 18146 GCGCCACGCGCGCGTAGCAGCCGTCGGG 18173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430012034669096