Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq4038 174 1e-38
>seq4038
Length=37899
Score = 174 bits (192), Expect = 1e-38
Identities = 201/268 (75%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558
||| |||||| ||||| ||||| ||||| | | |||| || || | | || ||||||
Sbjct 17907 CACACCCGTGCTGCCGAAGCCGCCGGCGCCACGTGCCGTGTCCTCGAT-CTCGTCCACCT 17965
Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618
| | | || ||| |||| |||| ||| |||||||| | |||||||| ||
Sbjct 17966 CCTGGATCTCCGGGTACGCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCT 18025
Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678
| || ||| || | | || ||||||||| | |||||||||||||||||||||||
Sbjct 18026 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 18085
Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738
||||||| |||||||| |||||| ||||||||| | ||||| ||| ||||||||||| |
Sbjct 18086 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAG 18145
Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGG 5766
| |||||||| ||||||| || |||||
Sbjct 18146 GCGCCACGCGCGCGTAGCAGCCGTCGGG 18173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430012034669096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |