Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq6666 116 3e-21 seq4038 98.7 7e-16 >seq6666 Length=19192 Score = 116 bits (128), Expect = 3e-21 Identities = 367/564 (65%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| || || || ||||| | ||| || ||||| || || || | | |||| Sbjct 10622 AGCTGCTTCTGGAGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 10681 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | | ||| || || | |||| || ||| || | |||| Sbjct 10682 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 10741 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 |||||||| || || || || || | ||||||| | |||| | |||||| | |||||| Sbjct 10742 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGACA 10800 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| |||| |||||| ||||| || | ||| |||||| || || || || Sbjct 10801 GGACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 10860 Query 25653 AAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGGTTGT 25711 | || |||||||| || ||| | ||| | | ||| || || | || Sbjct 10861 TTCATTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGT 10920 Query 25712 CC----CT----GATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 25763 | || |||| |||||| ||||| ||||| ||| || ||| Sbjct 10921 GCGCAGCTTGTGAATAACCTCCGCG---------AGCTGGTCCACGCCCTGGTTCGTGTA 10971 Query 25764 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGG 25823 ||| || |||||||||||||| || || || | || ||||||||| ||||| || || Sbjct 10972 GTCGGCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGG 11031 Query 25824 TCCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 ||| || || || |||| | | | | || || | | |||| | | || | || | Sbjct 11032 TCCGAGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATC 11090 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | |||||| ||| | | | ||| || | Sbjct 11091 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCAC 11150 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 11151 TGATGAACCACAGCAGCTCCTCCG 11174 >seq4038 Length=37899 Score = 98.7 bits (108), Expect = 7e-16 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 40723 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAAGGGTCGCACCCAA 40782 ||||||| | |||||| || | | |||||| | || ||| | || ||| | | Sbjct 17990 TCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCTTGACGGGGAAGTCCTCGGCCGCGT 18049 Query 40783 AGTTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 40842 ||| |||| || ||||| | |||||| | |||||||| ||| | ||| ||||| || Sbjct 18050 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 18109 Query 40843 CGTCTATAAAATTTTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 40902 ||| || || || | || || |||||||| | || ||||| | ||||| ||| Sbjct 18110 TGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAGGCGCCACGCGCGCGTAGCAGCCGT 18169 Query 40903 GGGGCATCTTTACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCAAAGGAGGGGACCACGA 40962 ||||| | | ||||||||||||| || ||| || |||| | ||||| |||| Sbjct 18170 CGGGCACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGG 18229 Query 40963 CCGGGTAAGCGGCCGCTAGGTCGTAACCCGCGGC 40996 | ||| ||||||| ||||| |||||||| Sbjct 18230 CGTCGTAGGCGGCCGACAGGTCCAGGCCCGCGGC 18263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340104092513559