Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq6666 116 3e-21
seq4038 98.7 7e-16
>seq6666
Length=19192
Score = 116 bits (128), Expect = 3e-21
Identities = 367/564 (65%), Gaps = 21/564 (4%)
Strand=Plus/Plus
Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472
||||| ||| || || || ||||| | ||| || ||||| || || || | | ||||
Sbjct 10622 AGCTGCTTCTGGAGAGGCTCGACGTGGTTCAGATACACGTGGGCATCGCCAATAACGTGG 10681
Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532
|||||||| || || | | ||| || || | |||| || ||| || | ||||
Sbjct 10682 ACAAACTCACCAGGCTTCAACCCCGTCACCTGCGCCACCAGTCGCGTCAGCAACGCGTAG 10741
Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592
|||||||| || || || || || | ||||||| | |||| | |||||| | ||||||
Sbjct 10742 CTGGCGATATTGAACGGCACGCCAAGTCCCATGT-CGGCCGAGCGCTGGTACATCTGACA 10800
Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652
|| | ||| |||| |||||| ||||| || | ||| |||||| || || || ||
Sbjct 10801 GGACAACTCGCCGTCAGCCACGTAGAACTGGCAGAACATGTGGCACGGCGGGAGCGCCAT 10860
Query 25653 AAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTC-TTCTGGGTTGT 25711
| || |||||||| || ||| | ||| | | ||| || || | ||
Sbjct 10861 TTCATTGAGATCCGCCGGGTTCCACGCCGACAGCACGATCCGTCGGTCGGTCGGGTTCGT 10920
Query 25712 CC----CT----GATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 25763
| || |||| |||||| ||||| ||||| ||| || |||
Sbjct 10921 GCGCAGCTTGTGAATAACCTCCGCG---------AGCTGGTCCACGCCCTGGTTCGTGTA 10971
Query 25764 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGG 25823
||| || |||||||||||||| || || || | || ||||||||| ||||| || ||
Sbjct 10972 GTCGGCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCACTGGAAGCCGTAGACAGG 11031
Query 25824 TCCTAGGTCTCCATCTTCCCTGTGCTCAAAG-CCCCTCTTATCCAAAAAGTCTCTGGAAC 25882
||| || || || |||| | | | | || || | | |||| | | || | || |
Sbjct 11032 TCCGAGATCGCCCACTTCTC-GCGATTGCAGTCCACGACTGTCCAGATACTCCCGCGATC 11090
Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942
||||| |||||||||| | | |||||| ||| | | | ||| || |
Sbjct 11091 CATTGCCGTCCCAGATGTGGATGTCCTTCTGCTGCAGCGTGTGCGCACTCGTGTCTCCAC 11150
Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966
||| |||||||||||||||| |||
Sbjct 11151 TGATGAACCACAGCAGCTCCTCCG 11174
>seq4038
Length=37899
Score = 98.7 bits (108), Expect = 7e-16
Identities = 186/274 (68%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 40723 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAAGGGTCGCACCCAA 40782
||||||| | |||||| || | | |||||| | || ||| | || ||| | |
Sbjct 17990 TCTCGAGGATGAGCTGCGCCACGCGGTCGCCGCGCTTGACGGGGAAGTCCTCGGCCGCGT 18049
Query 40783 AGTTAAACAATATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 40842
||| |||| || ||||| | |||||| | |||||||| ||| | ||| ||||| ||
Sbjct 18050 GGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCCCG 18109
Query 40843 CGTCTATAAAATTTTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 40902
||| || || || | || || |||||||| | || ||||| | ||||| |||
Sbjct 18110 TGTCGATGAACTTCTTGAGCGCGAGGCCGGAGCGAGGCGCCACGCGCGCGTAGCAGCCGT 18169
Query 40903 GGGGCATCTTTACGGCCAGGTCCGTCTTTACCAGGGCCCTGCCAAAGGAGGGGACCACGA 40962
||||| | | ||||||||||||| || ||| || |||| | ||||| ||||
Sbjct 18170 CGGGCACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCGGGGATCACGG 18229
Query 40963 CCGGGTAAGCGGCCGCTAGGTCGTAACCCGCGGC 40996
| ||| ||||||| ||||| ||||||||
Sbjct 18230 CGTCGTAGGCGGCCGACAGGTCCAGGCCCGCGGC 18263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340104092513559
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |