Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq21 307 3e-78 >seq21 Length=30282 Score = 307 bits (340), Expect = 3e-78 Identities = 879/1346 (65%), Gaps = 9/1346 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||||||||| || || ||| ||| || || || || | ||||| |||| || Sbjct 2727 TTCACGCACGCGACCCCGACACTGTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCC 2786 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | ||| ||||||| ||||| ||||| |||| ||||| || ||| | Sbjct 2787 TGCTTCCTGTTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAG 2846 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || |||||| || || || || || | || ||||| | || || Sbjct 2847 TGCGCGTGCATCTCCAAGTGGGCCGGGGGTATCGGCATCAGCATGCACAACATCCGCGCC 2906 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| || ||||| || ||||| || | || ||||| | | |||||||| || Sbjct 2907 ACGAATAGCTACATCCGTGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGC 2966 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 ||||| || | || || | ||||| |||||||| ||||| |||||||| || |||| Sbjct 2967 GTGTTCAACGACACGGCCCGCTACGTGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTC 3026 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || || ||||| || || || | || ||||| || || || || || ||| Sbjct 3027 GCCATCTACCTTGAGCCCTGGCACGCGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAAC 3086 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||| || || || || |||||||| || || ||||| | || | Sbjct 3087 CACGGCAACGAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTG 3146 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||| | |||||||| | || ||| || || ||||| | ||| || Sbjct 3147 TTCATGAAGAGGGTGGAGGCCAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCCCCT 3206 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | ||| ||||| || || | || | || || |||||||| || |||| Sbjct 3207 GGACTCTACGAGTGCTGGGGCGAGGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAG 3266 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 ||| || || ||||| || ||| ||| |||| ||||| |||||| |||| ||||| Sbjct 3267 GGACGCGCGCGCAAGACGATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAG 3326 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || |||| ||| | ||||| || || |||||| ||||| |||||| Sbjct 3327 ATCGAGACGGGCGTGCCCTTCATGCTCTACAAGGACGCGGTCAACCGGAAGTCGAACCAG 3386 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| |||| || || || | |||||| | || |||| | || || ||||| | Sbjct 3387 CAGAACCTCGGCACGATCCGCTCCAGCAACTTGTGCTGCGAGGTGATGGAGTACACGTCC 3446 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 ||||||||| ||||| || ||||| || ||| | ||||| || |||||| | || Sbjct 3447 CCCGACGAGGTGGCCGTGTGCAACCTGGCCTCGGTGGCGCTGCCCAAGTTTGTGGAGGAG 3506 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCG 364384 || || ||| ||||| | || || || || ||| | |||| || |||| || Sbjct 3507 GGCGTGTTCGACTACCAGAAGCTCTACGAGGTCACCAAGGTCAT--CACGCGCAACCTGA 3564 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTAATATGCGT 364443 ||||||| |||||| || || || || | | | || || || || || ||||| Sbjct 3565 ACAAGGTCATCGACGTCAACTACTACCCCGTGGCCG-AGGCGCGCAAGTCCAACATGCGC 3623 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || ||||| || || | || || ||||||||||| |||| || || | | || | Sbjct 3624 CACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCGTTCATCCTCATGAACTTC 3683 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 || || || || || || | || || ||| ||||||| || || || || | | Sbjct 3684 GCGTTCGAGAGCGAGGAGGCCCGCGAGCTCAACAAGAAGATCTTCGAGACCATCTACTAT 3743 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || || ||| | || || | || || || |||| || | || Sbjct 3744 GCGGCTATGGAGACGTCCATGGAGATCGCCAAGGAGCTCGGCCCGTACGAGACGTTCCAG 3803 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCA---CGCCATCT 364680 || || || |||| | |||||||| || | ||| |||| || | || Sbjct 3804 GGCTCGCCGGCCAGCAAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTCGTCG 3863 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | || |||||||||| |||| ||||| | ||||| || |||||||| Sbjct 3864 GGCCTGTGGAACTGGGCGGCGCTGAAGGAGAACGTGATCAAGCACGGCCTGCGCAACTCG 3923 Query 364741 CTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGC 364800 || | || ||||||||||| || || || || ||||||||||| |||||||||| | Sbjct 3924 CTGCTGGTGGCCCCCATGCCCACTGCCTCGACGGCCCAGATCCTCGGCAACAACGAGTCC 3983 Query 364801 TTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTA 364860 |||| |||| || ||| | || ||||| || || |||| || || || | Sbjct 3984 ATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCTGGCCGGCGAGTTCACGATC 4043 Query 364861 GTTAATAAGTACCTAGTCAAGGATCT 364886 || || |||||||| | ||||| || Sbjct 4044 GTCAACAAGTACCTGATGAAGGAGCT 4069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303218620220906