Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq21 297 2e-75 seq5738 143 3e-29 seq5736 141 9e-29 seq5227 104 2e-17 seq3557 84.2 2e-11 >seq21 Length=30282 Score = 297 bits (328), Expect = 2e-75 Identities = 1135/1759 (65%), Gaps = 50/1759 (3%) Strand=Plus/Minus Query 144751 GCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACGT 144810 ||||| ||||||||||| || ||||| ||| ||| | |||| ||| ||||| || Sbjct 4355 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGT 4296 Query 144811 CATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGAA 144870 | | | || || || || | | || ||||| ||||| || |||| | Sbjct 4295 GAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATGTA 4236 Query 144871 AGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTCATTTCCCAAGCGGTCTT 144930 ||| ||||||||| | || || | || || ||| || ||||| | ||||| Sbjct 4235 GGCGCCGCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTT 4176 Query 144931 GTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGTGCGC 144990 |||| || | ||||||||| ||| | | | | ||| | || || ||| Sbjct 4175 GTACTTCTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGCCGCTGTCATT 4116 Query 144991 AAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCAATTAA 145050 | || ||| |||| |||| ||| | | | || ||||| || | || | Sbjct 4115 CAGGATCTGGTTGCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAG 4056 Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| ||||||| | ||||||||||||| ||| || || |||| ||| ||||| Sbjct 4055 GTACTTGTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGT 3996 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | | || || | |||||||| ||||| ||||| || || |||| || ||||||||| Sbjct 3995 GTACGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGG 3936 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 ||||||| | || ||||||||||||||||| | | || ||||| |||| |||| Sbjct 3935 GGCCACCAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCA 3876 Query 145231 ATCCCATAG---CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCT 145287 | ||| || ||| | ||| | ||| ||||||||||| |||| || ||||||| ||| Sbjct 3875 GTTCCACAGGCCCGACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCT 3816 Query 145288 GGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAACTCG 145346 ||| || ||| || || | || || | || | | ||||||| ||| || Sbjct 3815 GGCCGGCGAGCCCTGGAACG-TCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACG 3757 Query 145347 CCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCAT 145406 ||||| ||| | | || || |||||| || | | |||||||| || || | Sbjct 3756 TCTCCATAGCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCT 3697 Query 145407 CGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGC 145466 |||||||| ||| | | || || | || || || ||||| ||||| | || | || Sbjct 3696 CGCTCTCGAACGCGAAGTTCATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGC 3637 Query 145467 CGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGG 145525 ||||||| || || ||||||| | | | |||| | | || || | | | || | Sbjct 3636 CGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGAC-G 3578 Query 145526 TCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAG 145585 ||||| | || |||| ||| ||| | ||||| || | | | ||| | || Sbjct 3577 TCGATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAG 3518 Query 145586 TCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCG--ATCGACGCCAAATTAC 145643 || ||| |||| | ||||| | || | | | ||| | ||| |||| || | Sbjct 3517 TCGAACACGCCCTCCT------CCACA-AACT-TGGGCAGCGCCACCGAGGCCAGGTTGC 3466 Query 145644 AAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATT 145703 | || ||| ||| |||| | |||| | | | |||| |||||| ||||| | Sbjct 3465 ACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGC 3406 Query 145704 TGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGT 145763 ||| || || || || ||||| || |||| |||| ||||||||||||||||||| Sbjct 3405 GGATCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGA 3346 Query 145764 ACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACG 145821 | || |||| ||||| | ||||| |||| ||| ||| || | |||||| Sbjct 3345 AGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAAC--CACAGCTGCTGCGCGTT 3288 Query 145822 CACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 | | || | ||| ||||| | ||||| || || || ||||||| | Sbjct 3287 GATCGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTC 3228 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 || |||| ||| | || || || | ||||| || | ||| ||| ||| || Sbjct 3227 GCCCCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATT 3168 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CGCGC 145999 ||| | || | || ||| |||| ||| ||||||||||||||||| | || || ||||| Sbjct 3167 GGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGC 3108 Query 146000 GCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACT-ATAGATGTCC 146056 || |||| ||| | || || ||| || || | || | ||| | | |||| Sbjct 3107 GCGGTGCA--GCTC-GTTGCCGTGGTTCTTGC-GCAGGTCCAGGA-ACTCGAACACGTCC 3053 Query 146057 GCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCC 146113 |||||||| || |||| |||| ||||| | || || || ||| || ||||||||| Sbjct 3052 GCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCC 2993 Query 146114 ACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCG 146173 |||| || || ||| ||| || ||||||| |||||| || ||| ||| |||| Sbjct 2992 ACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCG 2933 Query 146174 TTCGT-----AGA-GT--TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 ||||| || || ||||| ||| ||||| | | || | | | || Sbjct 2932 TTCGTGCCACGGATGTAGCTATTC--GTGGCGCGG------ATGTTGTGCATGCTGATGC 2881 Query 146226 CGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGT 146285 ||| ||| ||| | ||||||| || ||||| | |||||| ||||||||||| | Sbjct 2880 CGATACCCCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCT 2821 Query 146286 CAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCC 146345 ||||| ||| | ||| | | ||| ||||| || ||| || | |||||| | Sbjct 2820 CAATGGAGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGC 2761 Query 146346 CCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACG 146405 | || |||| |||||| |||||||||| || | ||| | ||| | | |||| Sbjct 2760 CGGCGTTAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACG 2701 Query 146406 TTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGT 146465 | |||| ||| | | ||||||| || ||||||| || |||||||| | ||| | Sbjct 2700 TCTCGAGGGCGGCCTTAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCATCT 2641 Query 146466 GTTGGGGCCGCTCCGCCAC 146484 | || || |||||| |||| Sbjct 2640 GCTGCGGGCGCTCCACCAC 2622 >seq5738 Length=44011 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||||||||||| || |||||||| ||||| Sbjct 34741 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 34682 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 34681 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 34622 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||| | Sbjct 34621 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 34562 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || | ||| || || || || || || ||||| ||||||||| Sbjct 34561 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 34513 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||||||||||| || |||||||| ||||| Sbjct 34513 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 34454 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 34453 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 34394 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || |||||||| | | || | | || | | ||| | Sbjct 34393 GATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCAC 34334 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | ||| || || || || || || ||||| |||||||| Sbjct 34333 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34286 >seq5736 Length=80658 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||||||| | || | ||||||||||| || |||||||| ||||| Sbjct 56842 GCCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 56783 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 56782 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 56723 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||||| | || | | || | | ||| | Sbjct 56722 GATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCAC 56663 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || || || || ||||| |||||||| Sbjct 56662 GTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56615 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || ||||| | || | ||||||||||| || |||||||| |||||| Sbjct 57069 CCACCGCGAAGGCGAAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 57010 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 57009 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGG 56950 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||||| | || | | || | | ||| | | Sbjct 56949 ATGCCCTCCTTGTCCTGGATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 56890 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | || || || || || || || ||||| ||||||||| Sbjct 56889 TCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 56842 >seq5227 Length=11794 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||||| |||||| ||||||||||| ||| ||| Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | ||||||||||| || ||||| || || ||||| |||||||||||||| | | Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGT 2317 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | | |||| | ||| | ||| | || | ||| || || || || || || || | Sbjct 2318 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 2377 Query 131225 AAATCTGCATGA 131236 | |||||||||| Sbjct 2378 AGATCTGCATGA 2389 >seq3557 Length=22309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | || |||||| || |||||||| || Sbjct 8063 CCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 8004 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 8003 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 7944 Query 131128 ATTCCT 131133 |||||| Sbjct 7943 ATTCCT 7938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471965109006720