Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq544 187 5e-42 seq2518 183 6e-41 seq5150 174 3e-38 seq1091 104 5e-17 seq61 87.8 4e-12 >seq544 Length=17931 Score = 187 bits (206), Expect = 5e-42 Identities = 548/824 (67%), Gaps = 24/824 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||| ||||||||||||| || Sbjct 6746 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAAGGGGTTCTTG 6805 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 | ||||| ||||||| ||| || | ||| | | |||||| ||||| ||||| | Sbjct 6806 ACGTTGTAGAGCTTGGGCACGCCCAGCGAGTAC-AGCAGGCGGTCGGCCACGAACTCGAT 6864 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || ||||||||||| || | | || || | | || || | Sbjct 6865 GTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTCCACG-GGCAGCGAGTCGCACA 6923 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAGAGAC 251799 ||| || | ||| ||| || ||||| || || | | ||| | | | | || Sbjct 6924 CGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCGTGCACGCGGCTCTCGGGA- 6982 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 || ||||| ||||||| ||||||| ||| | ||| || | || ||||| ||||||| Sbjct 6983 AGTTTGTTGACCAGCTTGGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTCGT 7040 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||||||| ||||||||| | | |||||| ||||| | || || ||| |||||| Sbjct 7041 CGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGGGCATGAGGCCGCGCTTCTTGAGCC 7100 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACA-CCCATGCAACA 251976 ||||||| | ||| ||||| || ||||| | | || || || | || | | || | Sbjct 7101 AGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCAAC-CGCAGCGAACGCCAGC 7159 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTT 252032 || ||||| | ||||| || ||| | |||| | ||||| ||| ||||| Sbjct 7160 AGACGCTCCGGGTACGACGACACCCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCCTT 7218 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCG-- 252090 ||| || ||||| || || || || || || |||| ||| ||||| Sbjct 7219 CTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAACAGGTGGTTCTTCTC--CATCGTA 7276 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150 |||| |||| || || | || || ||||| | ||| | |||||| ||| || Sbjct 7277 TCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCGGCGTGGATGTTCTCGATGGCG 7336 Query 252151 ATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTT 252210 |||||| | | ||||| ||||| || | ||||| || ||||| | Sbjct 7337 ATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCACTTCGTTGCTGAAGTTCATG 7396 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 || | |||||| |||| ||||| ||||| | || |||||| | || | | ||||||| Sbjct 7397 GCCAGGTTCTCGTTCACGATGCCGTCGCTCGCCGCGAAGAAGGCCAGCACGTGCTTGATG 7456 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGA 252330 ||| ||||| | ||| | ||||| | |||||||| | ||| || ||| Sbjct 7457 AAGAACCGCTCGTTGTCCGTCAGCTTCT---GCCAGTCGTTCAGGTCGTGCACCAGGTCC 7513 Query 252331 ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || || |||||||||| | || | | |||||||||||||| Sbjct 7514 AACTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGTACAT 7557 >seq2518 Length=24447 Score = 183 bits (202), Expect = 6e-41 Identities = 563/855 (66%), Gaps = 17/855 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||| ||||||| ||||| | Sbjct 23761 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTC 23702 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 || ||||| ||| | ||| || | ||| | | |||||| ||||| ||||| | Sbjct 23701 GCGTTGTAGATCTTCGACACGCCCAGCGAGTAC-AGCAGGCGGTCGGCCACGAACTCAAT 23643 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | |||||| ||||||||||| |||| | ||| || | | || | | Sbjct 23642 GTACTGGCACATCAGCGACGAGTTCATGCCGATCAGCTCCACA-GGCAGGGAGTCGCGCA 23584 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| || | ||| ||| || || || | ||| || | | ||| | | | || Sbjct 23583 CGAACTCGTGCTCGATGGTCACGGCATCGTGCACGATCTCGTGCACGCGGCTCTCCGGCA 23524 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 |||||||| ||||||| ||||||| ||| | | || | ||||| ||||| |||| Sbjct 23523 GCTTGTTCACCAGCTTGGAGTACATGAGGCAGGCGAAGTCCGTGTGCATGCCCTCATCGC 23464 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| | |||||| || | | ||| |||||||||| || || ||| ||||||||| Sbjct 23463 GGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATCAGGCCGCGCTTCTTGAGCCAGA 23404 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 |||| | ||| || || || ||||| | | ||||| ||| | | || | || | Sbjct 23403 AGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCAGCGAACGCCAGCAGAC 23344 Query 251981 GCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTTCTTT 252036 |||| | ||||| || ||| | |||| | ||||| ||| || ||||| Sbjct 23343 GCTCCGGGTACGACGACACCCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTTCTTC 23285 Query 252037 CCAACCGCGGGGATTGTTTCGATTGCATCAAAG-AGAGAGTTCCGCTCGGCATCGTCCTC 252095 || ||||| || || || || || || || || | ||| | |||||| Sbjct 23284 TTGACGCACGGGATCGTCTCAATGGC-TCGCAGCAGGTGGTCCTTCTCCACCGCGTCCTT 23226 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| || || | || || ||||||| |||||| |||||| ||| || ||||| Sbjct 23225 GATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCGATGGCGATCTG 23166 Query 252156 GTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAAT 252215 | || | ||||| ||||| || | || || || ||||| | || | Sbjct 23165 GAAACCGTAGAAGCAGCGCGCCTCCGGCACCTGCACCTCATTGCTGAAGTTCATGGCCAG 23106 Query 252216 GTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTG 252275 |||||| |||| ||||| |||||| | || |||||| | || | | |||||||||| Sbjct 23105 GTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAA 23046 Query 252276 ACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTC 252335 ||||| | ||| | || || | |||||| | ||| || ||| | || Sbjct 23045 CCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTC 22989 Query 252336 TTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGTACT 252394 || |||||||||| | | | |||||||||||||||| ||| |||| || | | || Sbjct 22988 CTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCGTGCTCCT 22930 Query 252395 TGATTGGGAA-AGCA 252408 ||| ||||| |||| Sbjct 22929 GGATCGGGAACAGCA 22915 >seq5150 Length=29312 Score = 174 bits (192), Expect = 3e-38 Identities = 662/1022 (65%), Gaps = 39/1022 (4%) Strand=Plus/Minus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 |||||||| |||| || |||||||| || || ||||| | ||||||||| ||| || Sbjct 15901 GATCTGTGCAACTGCGAGTTCTCGCTTGCTTACGGTGGTATGATTCTGCTGAACAACGCC 15842 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 ||||| | ||||||| ||| |||| || ||||| ||| ||||| || |||||| Sbjct 15841 CGCCTTCGCCTCAAGCGCGGCCACCGTTACGGTCTGTGCGGCCCCAACGGTTGTGGTAAG 15782 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAG 279530 || || |||||||||||||| ||||| ||||| || || || || | | ||| Sbjct 15781 TCGACGCTCATGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCCCAGCAGGGACGAG 15722 Query 279531 GTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTC 279590 | | ||| |||| || |||||| || | | | || | || | ||| || Sbjct 15721 CTCAAGACTGTGTTCGTCGAGCACAACCTGCAGGCTTCGGAGGCCGAGCTGTCCGTGGTC 15662 Query 279591 GACTTCCTAACGTCTGA-CAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCA 279649 |||||| | |||| | | | | || | | || | | | |||| || | Sbjct 15661 GACTTCATC----CTGATCGACGACGACCTGAAGAACACCCCCCGCAAGGAGGTCGAGGA 15606 Query 279650 GAAACTGGAGGCCAATG--GTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCT 279706 || | || ||| | || | || |||| | | | || || || || Sbjct 15605 CGCTCTTG---CCGATGTCGGCTTCACCGCCGAGATGCAGGCCCAGGCCGTCGGCTCCCT 15549 Query 279707 GTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGT 279766 ||| ||||||||||||||||| || | || | || ||||| || ||| || || | Sbjct 15548 GTCCGGTGGTTGGAAGATGAAACTCGAGCTGTCGCGTGCCATGCTGCTGAAGGCTGACAT 15489 Query 279767 CCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTC 279826 || ||||| |||||||| || |||||| |||| || ||||| || ||||| | | Sbjct 15488 TCTGCTGCTCGATGAGCCCACGAACCACTTGGATGTCAAGAACGTCGCTTGGCTCGAGAA 15429 Query 279827 CTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCT 279886 |||||| || || || || || | ||| |||| || || |||||||| |||||||| Sbjct 15428 CTACCTGACGAGCGTGCCCAACGTCACCTCCATCATGGTGTCCCACGACTCCGGCTTCCT 15369 Query 279887 AGATGCCGTGTGCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCA 279943 || |||||| || |||||| ||||| ||| | || |||||| ||| |||| Sbjct 15368 CGACAACGTGTGTACTAACATCATCCACTACGAGACCCGTAAGCTGAAGATCTACAAG-- 15311 Query 279944 CATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCT 280003 ||||||||||| ||||||| || || ||||| |||||||| || || Sbjct 15310 ----GGCAACCTGTCCAAGTTCGTGGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCT 15255 Query 280004 GAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACAT 280062 || | | || ||||| ||||| ||||| || || || | | |||| | | Sbjct 15254 CGAGTCGGAGAACGTCAAGTTCATCTTCCCGGAGCCTGGTTTCCTTGCCGACATCAAGAA 15195 Query 280063 CAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGGCCCCA 280122 ||| || || ||||||| || | ||| | || || || | | | Sbjct 15194 CAAGGGTAAGC-CAATCATTCGTCTGACCAACTGCTCGTACAAGTACCCTGGTGCCTCGA 15136 Query 280123 A--CATC-TTCAGCAGTGTCAACTCG--CAGGT---TTCTAT-GAACTCACGGATTGGTG 280173 | | || ||| || || |||| | || ||| | || | || || | | Sbjct 15135 AGCCGTCGATCAACA---ACATCTCGGTGACGTGCGCTCTGTCGAGC---CGTATCGCCG 15082 Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCC 280233 | | |||||||| ||||| |||||||| || || ||||| | ||||| || ||| Sbjct 15081 TGCTGGGACCCAACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGG 15022 Query 280234 AGGCCACTGAGGGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 || | || || || | || |||||||| || |||||| | || ||||| || ||| Sbjct 15021 AGCCGAC-CAGCGGCCAGGTGTGGAAGCACCCTGCCATGCGTTTCGCCTACGTGGCCCAG 14963 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||||||||||||||| ||| ||||| ||| ||| | ||||| ||||| |||||| Sbjct 14962 CACGCTTTCCACCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTACATCCAGTGG 14903 Query 280353 CG 280354 || Sbjct 14902 CG 14901 >seq1091 Length=38999 Score = 104 bits (114), Expect = 5e-17 Identities = 238/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || | |||||||||| || || |||| ||||| ||||| ||| | Sbjct 11623 AAGGTGGCACAACTAGCTGGTTATGTGTCGGAGCACTCTGCATACCACCACGGCGAGGCG 11682 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||||||||||| || || |||||| ||||||| || ||||| |||||| || || Sbjct 11683 AGTCTGCAGGGCTGTATCGTGAACATGGCTCAGGACTTCGTTGGCAGCAACAACGTGCAC 11742 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 | ||| |||| |||||||| ||| | ||| | |||| || |||||| || Sbjct 11743 CTCCTGTCGCCCATTGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCGGCCAGC 11802 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAA---TCAGGCC 218892 || | || || || || || ||| || | ||||||| | | | | | || || | Sbjct 11803 GCTCGTTACATTTTCACCAATTTGGAGCAGCTCACGCGCCGGATCTACGATCCTCTGGAC 11862 Query 218893 GATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTAT 218952 | || | | || ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 11863 AACGACG---TTCTGAAGTACCTGGACGAAGATGGACAGTCGATCGAGCCGGAATGGTAC 11919 Query 218953 GTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 | || | ||| || | |||| || || || | | |||||||| || ||||| Sbjct 11920 ATCCCCGTTATCCCAATGGTGCTGGTCAACGGCAGCGACGGTATCGGAAC-GGGTT 11974 >seq61 Length=17534 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || ||||||||||| || || ||||||| || || ||||| | Sbjct 16899 ATCCGCGGTCTCTCGGGCGGCCAGAAGGTGAAGCTCGTCATCGCCGCCGCCATGTGGAAC 16958 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| |||||||||| | |||||| Sbjct 16959 CGTCCGCACTTGCTGGTGCTGGATGAGCCGACGAACTACCTGGACCGCGCGGCGCTGGGC 17018 Query 280833 GCTCTG 280838 || ||| Sbjct 17019 GCGCTG 17024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027730353687803