Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq6666 178 1e-39 >seq6666 Length=19192 Score = 178 bits (196), Expect = 1e-39 Identities = 467/702 (67%), Gaps = 27/702 (4%) Strand=Plus/Plus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-T 20192 ||| || || || || | ||||| |||||| | | || ||||| | || ||| | | Sbjct 10597 CGGGAATGGGCGCGGCATTCGCGTAAGCTGCTTCTGGAGAGGCTCGACGTG-GTTCAGAT 10655 Query 20193 AGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252 | | ||||||||| || | ||| | |||||| || || | | || || || || | Sbjct 10656 ACACGTGGGCATCGCCAATAACGTGGACAAACTCACCAGGCTTCAACCCCGTCACCTGCG 10715 Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 | | || || | | | |||||||| || || || || || || | ||||||| Sbjct 10716 CCACCAGTCGCGTCAGCAACGCGTAGCTGGCGATATTGAACGGCACGCCAAGTCCCATGT 10775 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA 20372 | |||| | ||| |||| ||||||||| | ||| |||||||| || || || || || | Sbjct 10776 CGGCCGAGCGCTGGTACATCTGACAGGACAACTCGCCGTCAGCCACGTAGAACTGGCAGA 10835 Query 20373 ACAAGTGACAGGGCGGAAGCGCCAT--CAACGACAAGTCCGCCGGGTTCCACGCACACAT 20430 ||| ||| || ||||| |||||||| || || | ||||||||||||||||| ||| Sbjct 10836 ACATGTGGCACGGCGGGAGCGCCATTTCATTGAGA--TCCGCCGGGTTCCACGCCGACAG 10893 Query 20431 AATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTC 20490 | ||| | || ||| ||| || | | | | || | || | ||||| Sbjct 10894 CACGATCCGTCGGTCGGTCGGGTTCGTGCGCAGCTTGTGAATAACCTCCGCGAGCTGGTC 10953 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | |||||| || ||||| |||| | |||| |||| ||||||||||||| ||| Sbjct 10954 CACGCCCTGGTTCGTGTAGTCGGCATGCATGTCCGTGTACTTGGCCCCAAAGTGCCGCCA 11013 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCG---CCAGGCCGCGCCC 20607 |||||| ||||| |||||||| | ||| || | ||||| ||| ||| || || | Sbjct 11014 CTGGAAGCCGTAGACAGGTCCGAGATCGCC--CACTTCT-CGCGATTGCAGTCCACGACT 11070 Query 20608 GGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTC 20667 | |||| |||||| || ||||| |||||| || | || ||| ||| ||| Sbjct 11071 GTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGA----TGTCCTT--CTGCTG 11124 Query 20668 CCTGGAGTCAGTACTC------CCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCG 20721 | | || | |||| || | | ||||| |||||||| | | | ||||| || Sbjct 11125 CAGCGTGTGCGCACTCGTGTCTCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCG 11184 Query 20722 CCAAAACACCCGCTTTGTGGTTAGTA-AGGGA--AAGTGGTCCCGCAGACTATACCTGGC 20778 ||| ||||| ||||| || || || | |||| | || ||||| ||||| ||| Sbjct 11185 CCAGAACACGCGCTTGGTCGTGAGCAGTGGGAACACGTTGTCCCTTAGACTGAACCGCAT 11244 Query 20779 CTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 |||| |||||| | || || |||||| | || || ||||| Sbjct 11245 CTGCGCGCCAAAGACCGACAGCGTGCCTGTTCCCGTCCGGTC 11286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441328204795720