Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5738 96.9 3e-15 seq3557 96.9 3e-15 seq5736 87.8 1e-12 seq4038 87.8 1e-12 >seq5738 Length=44011 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 34512 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 34454 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || ||| Sbjct 34453 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 34394 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | ||| |||||| ||| || ||||| Sbjct 34393 GATACCCTCCTTGTCCTGAATCTTCTGCTT 34364 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 34740 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 34682 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || |||||||||||||| || ||| Sbjct 34681 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGG 34622 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | ||| |||||| ||| || ||||| Sbjct 34621 GATACCCTCCTTGTCCTGAATCTTCTGCTT 34592 >seq3557 Length=22309 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 8064 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 8005 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 8004 AAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 7951 >seq5736 Length=80658 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || || ||||||||| |||||||| || || Sbjct 56841 CCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC-GCT 56783 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | ||||||||||| || ||||| |||||||| || ||| Sbjct 56782 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGG 56723 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || |||||||| Sbjct 56722 GATGCCCTCCTTGTCCTGGATCTTTTGCTT 56693 >seq4038 Length=37899 Score = 87.8 bits (96), Expect = 1e-12 Identities = 190/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 ||||||||| |||||||| | ||| |||||| |||||| || ||| || | || Sbjct 18263 GCCGCGGGCCTGGACCTGTCGGCCGCCTACGACGCCGTGATCCC-CGCGGGCGGC--AAG 18207 Query 39995 G--CTGGTGAAGACGGACATTGCTCTACAAC-TACCCAAAGAGTGCTACGGTAGAATAGC 40051 | || || ||||||||| | | || | | | ||| | | ||||||| | | || Sbjct 18206 GGCCTCGTCAAGACGGACCTGG-TCATCGCCGTGCCCGACGGCTGCTACGCGCGCGTGGC 18148 Query 40052 GCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATTC 40111 |||||| ||||| || ||||| ||| | ||||||| |||||||| || || | Sbjct 18147 GCCTCGCTCCGGCCTCGCGCTCAAGAAGTTCATCGACACGGGCGCCGGCGTGATCGACGC 18088 Query 40112 TGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGGT 40171 |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| || Sbjct 18087 CGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCGT 18028 Query 40172 GCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 || || |||||| | || |||||||| || ||| Sbjct 18027 CAAGCGCGGCGACCGCGTGGCGCAGCTCATCCTCGAG 17991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397023284762566