Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq544 125 2e-23 seq5150 114 3e-20 seq2518 111 3e-19 >seq544 Length=17931 Score = 125 bits (138), Expect = 2e-23 Identities = 280/412 (68%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 |||||||| || | || || || |||||| ||||||| ||||| ||| || Sbjct 7143 GTTGAAGGCATCTTCTTCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGC 7084 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | ||||| ||||| | | || |||||| ||||||| |||||||||||| | ||| Sbjct 7083 CTCATGCCCGGCCTGAGCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCATGCACACG 7024 Query 243439 CAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAA--CG-GT 243494 | |||| ||| || ||||| || ||||| ||||| || || ||| | || || Sbjct 7023 GACTTCGCGTGC-CTCATGTACTCCAAGCTGGTCAACAAACTTCC---CGAGAGCCGCGT 6968 Query 243495 CAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCC 243554 | | ||| || || || || | ||| | || ||| | |||||| | | || Sbjct 6967 GCACGAGATCGTCCGTGAGGCCGTCACCATCGAGCACGAGTTCGTGTGCGACTCGCTGCC 6908 Query 243555 ATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGA 243614 ||| || ||||||||||| |||||| | ||||||||||| ||||| ||||| Sbjct 6907 CGTGGAGCTCATCGGCATGAACTCGACGCTCATGTGCCAGTACATCGAGTTCGTGGCCGA 6848 Query 243615 CCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCT 243673 |||| | | | |||| || || ||| | |||||| |||||||||||| | || Sbjct 6847 CCGCCTGCTGTACTCGCTGGGCG-TGCCCAAGCTCTACAACGTCAAGAACCCCTTCGACT 6789 Query 243674 TTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||||| | || ||||| || || || || ||||||||||| ||||| || Sbjct 6788 GGATGGACATGATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 6737 >seq5150 Length=29312 Score = 114 bits (126), Expect = 3e-20 Identities = 451/695 (65%), Gaps = 37/695 (5%) Strand=Plus/Plus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 14876 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 14935 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 14936 GTGCGACTCAATGTGGTGGAAAGCGTGCTGGGCCACGTAGGCGAAACGCATGGCAGGGTG 14995 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| |||| | |||| | ||||| |||| ||| || || || Sbjct 14996 CTTCCACACCTGGCCGCTGGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 15055 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || || | ||| | || | | ||| || || ||| Sbjct 15056 CTTACCGGCACCGTTGGGTCCCAGCACGGCGATACGGCTCGACAGAGCGCA-CGTCACCG 15114 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | || |||| || | | | || | ||| || |||||| | | || Sbjct 15115 AGATGTT---GTTGATCGACG----GCTTCGAGGCACCAGGGTACTTGTA-CGAGCAGTT 15166 Query 333606 CGT-AGCTTCATGA-TGGC--ACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTC 333661 || || |||| |||| || |||| |||| | | ||||| || ||||| Sbjct 15167 GGTCAGACGAATGATTGGCTTAC---CCTTGTTCTTGATGTCGGCAAGGAAACCAGGCTC 15223 Query 333662 GGGGAACTTCCACGT---GGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGG 333718 ||||| | || | | ||| || |||| || ||||||| | | ||||| Sbjct 15224 CGGGAAGATGAACTTGACGTTCTCCGACTCG---AGCTCGTAGTAGGCCTTGGCCTCGGG 15280 Query 333719 ACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTC 333778 || || |||||||| |||||| || |||||||| |||||||||| || | || Sbjct 15281 CTTCTGCTCCACGAACTTGGACAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTC 15337 Query 333779 GTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCAC 333838 ||| ||||| || || || || ||||||||| ||||||||||| ||||| || | Sbjct 15338 GTAGTGGATGATGTTAGTACACACGTTGTCGAGGAAGCCGGAGTCGTGGGACACCATGAT 15397 Query 333839 GCACGAAACGTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACA 333896 | | | |||| | | | ||||||| ||| || ||||| ||||| ||| Sbjct 15398 GGAGGTGACGTTGGGCACGCTCGTCAGGTAGTTC--TCGAGCCAAGCGACGTTCTTGACA 15455 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| || ||||| || || || || | | || ||||| ||||| ||||| Sbjct 15456 TCCAAGTGGTTCGTGGGCTCATCGAGCAGCAGAATGTCAGCCTTCAGCAGCATGGCACGC 15515 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | || |||||||||| ||||| || || || || Sbjct 15516 GACAGCTCGAGTTTCATCTTCCAACCACCGGACAG 15550 Score = 96.9 bits (106), Expect = 8e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || ||||| ||||| |||| |||||||| || || || ||||| || Sbjct 15734 GGGGAAGCCCTCGAGCTGGCCGTTGGCAATGGCGCGCATGAGCGTCGACTTACCACAACC 15793 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || || ||||||||||| |||| || ||||| || | || | |||||||| Sbjct 15794 GTTGGGGCCGCACAGACCGTAACGGTGGCCGCGCTTGAGGCGAAGGCGGGCGTTGTTCAG 15853 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATC 334348 ||||| | ||||| || || || || || || || | |||||||| Sbjct 15854 CAGAATCATACCACCGTAAGCAAGCGAGAACTCGCAGTTGCACAGATC 15901 >seq2518 Length=24447 Score = 111 bits (122), Expect = 3e-19 Identities = 259/383 (68%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || |||||||||| || | | || ||| Sbjct 23391 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTTCTCGAAC 23450 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| | ||||| ||||| |||||| | ||| | |||| || ||||| || ||| Sbjct 23451 GAGCTGATCAGCCGCGATGAGGGCATGCACACGGACTTCGCCTGCCTCATGTACTCCAAG 23510 Query 243466 CTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCAT-CACAGAAGCAGTTGAAA 243523 || ||||||||| || || || || | | ||| | ||| || || || | Sbjct 23511 CTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCAC-GATGCCGTGACCA 23568 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAA 243582 ||| | || ||| | ||||| | | || || | ||| || ||||||||||| Sbjct 23569 TCGAGCACGAGTTCGTGCGCGACTCCCTGCC-TGTGGAGCTGATCGGCATGAACTCGTCG 23627 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 || ||| | |||||||| || ||||| ||||||||| | | | |||| || | Sbjct 23628 CTGATGTGCCAGTACATTGAGTTCGTGGCCGACCGCCTGCTGTACTCGCTGGGCGTGTCG 23687 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | |||||| | |||||||| || | || ||||| | || ||||| || || || Sbjct 23688 AAGATCTACAACGCGAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 23747 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||||||||| |||||||| Sbjct 23748 ACCAACTTCTTCGAGAAGCGTGT 23770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102765781956050