Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq21 246 4e-60 seq544 170 2e-37 seq2518 159 4e-34 seq3518 84.2 3e-11 >seq21 Length=30282 Score = 246 bits (272), Expect = 4e-60 Identities = 1097/1723 (64%), Gaps = 32/1723 (2%) Strand=Plus/Minus Query 113602 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTT 113661 ||||||||| || ||||||||||||| ||||||||| || | |||||||| | | ||| Sbjct 4349 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGTGAGCTT 4290 Query 113662 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | || || || | ||| || ||| | ||| || ||| || || Sbjct 4289 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATGTAGGCGCC 4230 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 || || |||| || || | ||| ||||| ||||| |||||||| || |||| Sbjct 4229 GCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTTGTACTT 4170 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||| | | || ||||| || || || || | |||||| | | || | || Sbjct 4169 CTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGCCGCTGTCATTCAGGAT 4110 Query 113842 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTT 113901 | | || || | ||||| || | || | || |||| || || | ||| Sbjct 4109 CTGGTTGCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTT 4050 Query 113902 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 113961 ||||| | ||||| || || || ||| | || || |||| |||||| || Sbjct 4049 GTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGG 3990 Query 113962 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCAT 114021 ||| | | |||| ||||| || | ||| ||||| || ||||| ||||||||||| |||| Sbjct 3989 CTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCAC 3930 Query 114022 GAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGT--CG 114079 || || ||| || || || | | | | | ||||| || || |||||| | Sbjct 3929 CAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCA 3870 Query 114080 TAGTTGAG----CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGC 114135 || | | || | ||| ||||| || ||||||| ||| || | | ||| Sbjct 3869 CAGGCCCGACGACGGGGTGACGCCC---CACATGTCGAACTGGAAGATGCCCTTGCTGGC 3813 Query 114136 TGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTC 114195 ||||| |||| || |||||||| ||||| ||| || | || | || ||| Sbjct 3812 CGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTC 3753 Query 114196 GAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGA 114255 | || || | || || ||||| || || || | | |||||| ||| Sbjct 3752 CATAGCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCT 3693 Query 114256 ATCAAACGCGA-GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 114313 || ||||||| || || | || || | |||||||| || ||||| |||| ||| Sbjct 3692 CTCGAACGCGAAGTT--CATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCG 3635 Query 114314 ATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCG 114373 || ||||| || | ||| || ||||| || || ||||||| || | || ||| Sbjct 3634 ATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCG 3575 Query 114374 ATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCA 114433 || ||| | || || || |||| ||||| |||| || | ||||| | ||| || Sbjct 3574 ATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTCG 3515 Query 114434 AAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 114493 || || ||| || ||| |||| || || || | || ||||| || ||||| Sbjct 3514 AACACGCC---CTCCTCC---ACAAACTTGGGCAGCGCCACCGAGGCCAGGTTGCACACG 3461 Query 114494 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAA 114551 | ||| || |||||||| || | || ||||| || || | | Sbjct 3460 GCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGG--A 3403 Query 114552 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 114611 | ||||| | ||||| || || ||||| ||| ||| |||||||| |||||| | | Sbjct 3402 TCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAGG 3343 Query 114612 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTGGCACAG 114671 || |||||||| | || | | || || || ||| || | || || | | Sbjct 3342 GCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGAT 3285 Query 114672 TGGCGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACC 114729 | | | || ||| ||||||| |||||||||| || |||| |||||||| || || Sbjct 3284 CGTCTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCC 3225 Query 114730 CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTC 114789 | | ||| |||| || || || | || |||||||| ||| ||| | ||| | Sbjct 3224 CCAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGC 3165 Query 114790 CTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCG 114849 ||| || | ||||||||| || || || | ||| || || |||| || || || ||| Sbjct 3164 CTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCG 3105 Query 114850 A-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 114908 || || | | || || || |||| |||| || || | | |||||||||| Sbjct 3104 GTGCAGCT-CGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGTGCC 3046 Query 114909 ACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACC 114965 | || || ||||| | |||| || ||||| || | || |||||| || || | Sbjct 3045 AGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGC 2986 Query 114966 TCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCC 115025 || ||| | || || ||||| ||||| || ||||| |||| || ||| || || | Sbjct 2985 GGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGC 2926 Query 115026 CCCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCC 115085 | || || || |||| | || | || ||| || || |||||||| |||| Sbjct 2925 CACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCGGCCC 2866 Query 115086 ACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCT 115145 |||| ||||| |||||||| | |||| || ||||||| || || || ||||| ||| Sbjct 2865 ACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCT 2806 Query 115146 TATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGG 115205 | || | ||||||||| ||||| |||||| | || || || ||||| || || | Sbjct 2805 GCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTG 2746 Query 115206 TTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGG 115265 | || |||||||| |||| | ||| ||||| ||||| ||||| | | |||| Sbjct 2745 TCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGGCCT 2686 Query 115266 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 115308 |||||| | ||| || || | || || ||||||| ||| Sbjct 2685 TAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 2643 >seq544 Length=17931 Score = 170 bits (188), Expect = 2e-37 Identities = 530/813 (65%), Gaps = 18/813 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 6727 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 6786 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 | || || |||||||| ||| | | | ||||| || | | | || || || Sbjct 6787 CCAGTCGAAGGGGTTCTTGACGTTGTAGAGCTTGGGCACGCCCAGCGAGTACAGCAGGCG 6846 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 || | ||| |||| ||||||| |||| | |||||||| |||||||| | || Sbjct 6847 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTC-CA 6905 Query 125938 TGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||| |||| ||| | | |||| | | ||| || ||||| || || ||||| ||| Sbjct 6906 CGGGCAGCGAGTCGCACACGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCGT 6965 Query 125997 GAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CACGGCAA 126050 | | | | | | | || | ||| || |||| |||| | |||| | | Sbjct 6966 GCACGCGGCTCTCGGGAAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCACG-CGA 7019 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || ||| | |||||||| ||| |||||| || || ||||||| ||| || |||| Sbjct 7020 AGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGGGCA 7079 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||| || |||||||| | |||||| || | || || || |||||||||||||| || | Sbjct 7080 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTT 7139 Query 126171 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACT 126230 | || |||||||| | |||||||| | | || | | | ||| |||||| Sbjct 7140 CAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCCGCGGGTCGCACCACT 7199 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 | | |||||| |||||||| |||| || ||||||| |||| || || || || | Sbjct 7200 TGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAACAGGT 7259 Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 126350 ||||| || | ||| ||||||||| | || ||||| || || ||| ||| Sbjct 7260 GGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCTCGGCGT 7319 Query 126351 GGACCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTAC 126408 ||| ||| ||||| ||| | ||||||| ||||||| ||| | ||| || Sbjct 7320 GGA--TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCTGCAC 7377 Query 126409 CTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAA 126468 || | | || || | | ||||| || || || ||| | | || || || Sbjct 7378 TTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTCGCCGCGAAGAA 7437 Query 126469 CGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAG 126528 ||||| | | ||| ||||| | | || || || |||| ||| |||||||| || Sbjct 7438 GGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGCTTCTGCCAGTCGTTCAG 7497 Query 126529 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 || | | || || | |||||| || ||||| Sbjct 7498 GTCGTGCACCAGGTCCAACTCCTCGGCCGTCCA 7530 >seq2518 Length=24447 Score = 159 bits (176), Expect = 4e-34 Identities = 360/536 (67%), Gaps = 14/536 (3%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 23786 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 23727 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || |||||||| | ||| | || | | ||| || | | | || Sbjct 23726 GTCCATCCAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTACAG 23667 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 || || || | ||| |||||||||||| ||||| | |||||||| ||||| || Sbjct 23666 CAGGCGGTCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAG 23607 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| || || | ||| | |||| | | ||| || |||||| || |||||| Sbjct 23606 CTCCACA-GGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGA 23548 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 23547 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 23493 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 ||| || || ||| | ||||| || ||| ||| || || |||||||||| ||| | Sbjct 23492 -GGCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGAC 23434 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | ||||| || || |||||||| | |||||| || | || || || ||||||||||||| Sbjct 23433 CAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGA 23374 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAA 126224 | ||||||||| |||||||| | |||||||| | | || | | | ||| Sbjct 23373 TGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCCGCGGGTCGC 23314 Query 126225 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCT 126280 ||||||| | |||||| ||||| || |||| || ||||||| |||| || ||| Sbjct 23313 ACCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCT 23258 >seq3518 Length=62287 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 172762 GAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTC-CCACGGAGAGGGAACACAC 172820 ||| ||||| || | ||||| || ||||| ||| || || || ||||| ||||| | Sbjct 13077 GAGCTGCGCGACAGTTGCATCACGCACATTCA-ACAGTTTTCCGCGAAGAGGAAACACGC 13135 Query 172821 CGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCAC 172880 | || || || || ||||| || | ||| ||||| ||||| || | ||| || ||||||| Sbjct 13136 CATACTGGTCCCGCCCAACAACTGCAAGTCCAGCCACTGCTAGTGCCTTAGCTGAATCAC 13195 Query 172881 CCTCCGTCACGATGAGCG 172898 |||| |||| ||| |||| Sbjct 13196 CCTCGGTCAAGATAAGCG 13213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597293244885640