Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq5317 172 3e-38 >seq5317 Length=6148 Score = 172 bits (190), Expect = 3e-38 Identities = 392/585 (67%), Gaps = 11/585 (2%) Strand=Plus/Plus Query 65973 CGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCAC-GC 66031 || || |||||||||||||| || ||| || || ||| ||||| || || || Sbjct 1575 CGTGTGGTGGAGATCTACGGCCCCGAGAGCTCCGGCAAGACAACGCTGGCGCTGAGTTGC 1634 Query 66032 GGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCT 66091 || ||| || |||||| | || || | | |||| ||||||||| || ||| | | Sbjct 1635 ATTGCTCAA-GCTCAGAAGACTGGCGGGACCTGTGCCTTCATCGACGCAGAGCATGCCAT 1693 Query 66092 CGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCC 66151 ||| | | |||||| ||| || || || || | ||| ||| || |||||| Sbjct 1694 TGACGCCCACTACGCCAAGGCTCTTGGTGTCGACATTGACGCGCTCTACGTCTCGCAGCC 1753 Query 66152 AGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTC 66211 ||| | ||||| | || |||||||||| ||| ||| ||| ||| || | || Sbjct 1754 GGACTCGGGCGAAGAAGCTCTGGAGATCGCCGACACGCTCATCAGGTCGGGGGCAGTGGA 1813 Query 66212 CATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACAT 66271 | || | || ||||| ||||||||| ||||||||||| |||||||| ||||| || || Sbjct 1814 CCTCGTGGTGCTGGACAGTGTGGCGGCTCTGGTGCCGCGCGCGGAGCTGGAAGGTGAAAT 1873 Query 66272 CGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGAC 66331 || ||| ||| | | ||||| || ||||| ||| ||||| |||| |||||||| Sbjct 1874 GGGAGACCAGCAGATTGCGCTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGGAAGCTGAC 1933 Query 66332 CGGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGAT 66391 || || | ||| ||||| || | | |||| || | ||| ||||| | Sbjct 1934 GGGATCGCTGTCCAAGTCCAACTGCACCATTATCTTCCTGAACCAAATCCGCCAGAAGGT 1993 Query 66392 CGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTA 66451 |||| | | || ||| | |||| || | ||||| | ||| ||||| | ||| Sbjct 1994 GGGCATCAT---CTTCGGATCTCCTGAGGTGACGTCGGGTGGCACGGCGCTGCGTTACTA 2050 Query 66452 CGCCTCGGTGCGTATGGA---TGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGC 66508 ||| || ||||| |||| | |||| || |||| | ||||| ||||| ||| Sbjct 2051 CGCGTCTGTGCGGCTGGACATTCGTCGCAAGACGGCCATC---AAGGAGGGCGACCAGGT 2107 Query 66509 TGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 |||||||||| || |||||||| | ||||||||||||||| Sbjct 2108 TGTCGGCAACGAGACCGTGGTGAAGGTGGCCAAGAACAAGCTGGC 2152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242446513862036