Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq21 515 4e-141 >seq21 Length=30282 Score = 515 bits (570), Expect = 4e-141 Identities = 1125/1683 (67%), Gaps = 51/1683 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || |||||||| ||||| ||||| || || ||| ||||| |||| || || |||||| Sbjct 2736 GCGACCCCGACACTGTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTG 2795 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||| ||||||||| || || | ||||| |||||| | || ||| | Sbjct 2796 TTGGCCATGCAGGACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGC 2855 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || ||||| ||||| ||||| | ||| || | || |||| | | | Sbjct 2856 ATCTCCAAGTGGGCCGGGGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGC 2915 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| || |||| ||||| || || |||||| Sbjct 2916 TACATCCGTGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAAC 2975 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || |||| ||||||||||||||||| || || | | | ||||| || ||||| |||| Sbjct 2976 GACACGGCCCGCTACGTGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTAC 3035 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||||||||||||||||||| | ||| | |||||||| ||||||||||||||| Sbjct 3036 CTTGAGCCCTGGCACGCGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAAC 3095 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || ||| | | || | ||||| |||||||| || |||||||| || || || ||||| Sbjct 3096 GAGCTGCACCGCGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAG 3155 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| || | |||||||| || || ||||||||| || ||||| | | Sbjct 3156 AGGGTGGAGGCCAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCCCCTGGACTCTAC 3215 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || || || | ||||| | | |||| ||||| | |||| || Sbjct 3216 GAGTGCTGGGGCGAGGAGTTTGAGACCCTTTATGAAAAGTACGAGAAGGAGGGACGCGCG 3275 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| || | || | |||||||| ||| |||||| ||| | |||||| Sbjct 3276 CGCAAGACGATCAACGCGCAGCAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACG 3335 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || ||||| ||| | | ||||||| | |||||| ||||| ||||||||| ||||| Sbjct 3336 GGCGTGCCCTTCATGCTCTACAAGGACGCGGTCAACCGGAAGTCGAACCAGCAGAACCTC 3395 Query 94552 GGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || |||| |||| || ||||| |||| | | ||||| || || || ||| Sbjct 3396 GGCACGATC---CGCTCCAGCAACTTGTGCTGCGAGGTGATGGAGTACACGTCCCCCGAC 3452 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | || ||||| ||||||| ||| | ||| ||| || ||| ||| | Sbjct 3453 GAGGTGGCCGTGTGCAACCTGGCCTCGGTGGCGCTGCCCAAGTTTGTG-GAGGAG----G 3507 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT- 94727 ||| |||||| || |||| || || || | | |||| | Sbjct 3508 GCGT----------GTTCGACTACCAGAAGCT------CTACGAGGTCACCAAGGTCATC 3551 Query 94728 -----GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 |||||||||| ||| |||||| |||| ||||||||| | |||||| || Sbjct 3552 ACGCGCAACCTGAACAAGGTCATCGACGTCAACTACTACCCCGTGGCCGAGGCGCGCAAG 3611 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || ||||||||||||||||||||||| ||||||||||| | | Sbjct 3612 TCCAACATGCGCCACCGCCCCATCGGCATCGGCGTCCAGGGCCTCGCGGACGCGTTCATC 3671 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGA 94901 | ||| | | | ||| | || | | ||| | | || ||| || ||||| Sbjct 3672 CTCATGAACTTCGCGTTCGAGAGCGAGGAGGCCCGCGAG-CTCAACAAGAAGATCTTCGA 3730 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCC 94961 | ||| || || | ||| ||| | ||| | | | |||| ||| ||| || Sbjct 3731 GACCATCTACTATGCGGCTATGGAGACGTCCATGGAGATCGCCA---AGGAGCTCGGCCC 3787 Query 94962 ACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG 95019 |||| |||||| || ||||| | | | ||||||| || ||||||||| | ||| Sbjct 3788 GTACGAGACGTTCCAGGGCTCGCCGGCCAGCA--AGGGCATCTTCCAGTTCGACATGTGG 3845 Query 95020 GGTGTGA---AGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAA 95076 || || | | | ||||| |||| |||||| || || | | || ||||| Sbjct 3846 GGCGTCACCCCGTCGTCGGGCCTGTGGAACTGGGCGGCGCTGAAGGAGAACGTGATCAAG 3905 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| || ||| ||||||| ||||||||||||||||| ||||| ||||| |||||| Sbjct 3906 CACGGCCTGCGCAACTCGCTGCTGGTGGCCCCCATGCCCACTGCCTCGACGGCCCAGATC 3965 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 3966 CTCGGCAACAACGAGTCCATCGAGCCGTACACGTCCAACATGTACAACCGCCGCGTGCTG 4025 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 ||||| || ||| | || |||||||| |||| | ||| |||| ||||| | Sbjct 4026 GCCGGCGAGTTCACGATCGTCAACAAGTACCTGATGAAGGAGCTGATCGAGCTGGGCATC 4085 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | | || ||||| | || | || ||||||||| ||||| || | Sbjct 4086 TGGACGCCCGACGTGCGCAACCAGATCCTGAATGACAGCGGCTCCGTGCAGAAGGTCAAG 4145 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATC---CCGCAGCGC 95373 || ||||| || |||||| | |||||||| |||||||||||| | | || | Sbjct 4146 GCCATCCCGGACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAACAGAAGGCC 4205 Query 95374 GTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNN 95433 ||| || |||| |||||| |||||| ||| ||| |||||||| Sbjct 4206 GTG---CTGGACCTGTCGGCCGACCGCGGCGCCTACATTTGCCAGAGCCAGTCGCTCAAC 4262 Query 95434 NNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGA 95493 || ||||| || | | | || | || || ||| ||||||| |||| Sbjct 4263 ATCCACATCGCCGACCCGACCATCAGCAAGCTCACATCGATGCACTTCTACGCCTGGAAG 4322 Query 95494 AAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAG 95553 ||||| ||||||||||| ||||| || |||| | || || || ||| |||| || Sbjct 4323 AAGGGGCTCAAGACCGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCAAG 4382 Query 95554 TTC 95556 ||| Sbjct 4383 TTC 4385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494673214404680