Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq674 102 6e-17 seq3754 86.0 5e-12 seq3607 86.0 5e-12 seq684 86.0 5e-12 >seq674 Length=5858 Score = 102 bits (112), Expect = 6e-17 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 108336 CGTAGCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAA 108395 ||| ||||| | || | ||||| |||| || || ||||| | ||| | |||||| Sbjct 4397 CGTGGCCGGCCTGGGCATCACGGCGGGCGCGCACCGCCTGTGGTCGCACCGCGGCTACAA 4456 Query 108396 GGCCACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACAC 108455 ||||| ||| | | || ||||| ||| ||| |||| |||| || ||| Sbjct 4457 GGCCAAGCTGCCGCTGCGCGTCTTCCTCATGCTGTGCAACTCGATGGCCTTCGAGGGCAC 4516 Query 108456 CATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGA 108515 |||| ||||| || ||| ||| | || ||||||||| ||| |||||||||||||| Sbjct 4517 CATCTTCGAGTGGTCGCGCGACCACCGCGTGCACCACAAGGCCTCGGACACGACGGCCGA 4576 Query 108516 CCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAA 108575 ||| |||||| | | | || ||| ||||||||| |||| ||| ||||| || ||| Sbjct 4577 CCCGCACAACTCGGGCCGCGGCCTCTTCTTCTCGCACATGGGCTGGGTCATGGTGCGCAA 4636 Query 108576 GGAC 108579 | || Sbjct 4637 GCAC 4640 >seq3754 Length=4720 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||||||| ||||||| |||||||| |||||| || | | Sbjct 422 GACCACCGCGTGCACCACAAGTACTCGGACACGAGCGCCGACCCGCACAACTCCGGCCGC 363 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || |||| ||| | ||| |||| ||||| || | | ||||||||| | ||| || | Sbjct 362 GGCTTCTTCTTCGCACACATGGGCTGGCTGCTGGTCAAGAAGGACCCCAAGGTGGTCAAG 303 Query 108595 GCCGG 108599 ||||| Sbjct 302 GCCGG 298 >seq3607 Length=13455 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||||||| ||||||| |||||||| |||||| || | | Sbjct 2 GACCACCGCGTGCACCACAAGTACTCGGACACGAGCGCCGACCCGCACAACTCCGGCCGC 61 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || |||| ||| | ||| |||| ||||| || | | ||||||||| | ||| || | Sbjct 62 GGCTTCTTCTTCGCACACATGGGCTGGCTGCTGGTCAAGAAGGACCCCAAGGTGGTCAAG 121 Query 108595 GCCGG 108599 ||||| Sbjct 122 GCCGG 126 >seq684 Length=5684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||||||| ||||||| |||||||| |||||| || | | Sbjct 5252 GACCACCGCGTGCACCACAAGTACTCGGACACGAGCGCCGACCCGCACAACTCCGGCCGC 5311 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGATCTCG 108594 || |||| ||| | ||| |||| ||||| || | | ||||||||| | ||| || | Sbjct 5312 GGCTTCTTCTTCGCACACATGGGCTGGCTGCTGGTCAAGAAGGACCCCAAGGTGGTCAAG 5371 Query 108595 GCCGG 108599 ||||| Sbjct 5372 GCCGG 5376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381735190964952