Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq21 107 2e-18 >seq21 Length=30282 Score = 107 bits (118), Expect = 2e-18 Identities = 287/433 (66%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || ||| | |||||||| || | ||| | ||| ||||||| | ||| | Sbjct 2637 CAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAGGCCGCCCTC 2696 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || ||||| | ||||| ||||| |||||||||||||||| || || |||| | Sbjct 2697 GAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACACTGTTTAAC 2756 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGC 123095 ||||||||| | || || |||| || || || || | || ||| || ||| | Sbjct 2757 GCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAGGACGACTCC 2816 Query 123096 ATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGC 123155 || || ||||| || || | | ||||||| || ||||| | | ||| || Sbjct 2817 ATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGGGCCGGGGGT 2876 Query 123156 ATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGA-AGCCGCATCAGAAGCACCGACGG 123214 || ||| | | | ||||| || | | ||| || | ||| |||| | |||| |||| Sbjct 2877 ATCGGCATCAGCATGCACAACATCCG-CGCCACGAATAGCTACATCCGTGGCACGAACGG 2935 Query 123215 AATCG-CCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCG 123273 ||| || || || |||||||||| || | ||| || | | || |||| | Sbjct 2936 -CTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGCTACGTGG 2994 Query 123274 ACCAGGGC---GGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTG 123330 |||||||| ||||| ||||| ||| || | || ||||| || || || ||||||| | Sbjct 2995 ACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGGCACGCGG 3054 Query 123331 ATGTGTACGATTT 123343 | |||| ||| || Sbjct 3055 ACGTGTTCGAGTT 3067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451957530726680