Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq21 250 3e-61 seq544 143 3e-29 seq2518 134 2e-26 >seq21 Length=30282 Score = 250 bits (276), Expect = 3e-61 Identities = 1065/1667 (64%), Gaps = 28/1667 (2%) Strand=Plus/Minus Query 115563 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 115622 ||||||||| || ||||||||||||| ||||||||| || | ||||| || | | ||| Sbjct 4349 GTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGTGAGCTT 4290 Query 115623 GGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 115682 | || || || | ||| || ||| | ||| || ||| || || Sbjct 4289 GCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATGTAGGCGCC 4230 Query 115683 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 115742 || || |||| || || | ||| ||||| ||||| |||||||| || |||| Sbjct 4229 GCGGTCGGCCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTTGTACTT 4170 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| | | || ||||| || || || || | ||||| | | || | || Sbjct 4169 CTCCTTGACGTGGTCCGGGATGGCCTTGACCTTCTGCACGGAGCCGCTGTCATTCAGGAT 4110 Query 115803 GAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTT 115862 | | || || | ||||| || | || | || |||| || |||| ||| Sbjct 4109 CTGGTTGCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTT 4050 Query 115863 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGG 115922 ||||| | ||||| || || || ||| | || ||||||| |||||| || Sbjct 4049 GTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGG 3990 Query 115923 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 115982 ||| | | |||| ||||| || | ||| ||||| || ||||| ||||||||||| |||| Sbjct 3989 CTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCAC 3930 Query 115983 GAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA 116042 || || |||||| || || | | | | ||||| || || |||||| | Sbjct 3929 CAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTTCCA 3870 Query 116043 GTTGAGCTTTGTC----TCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTG 116098 | | | | | | | ||||||| || ||||||| ||| || | | || | Sbjct 3869 CAGGCCCGACGACGGGGTGACGC-CCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCG 3811 Query 116099 GCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGA 116158 |||| |||| || ||||| || ||||| ||| || | || | || ||| | Sbjct 3810 GCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGTCTCCA 3751 Query 116159 GGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 116218 || || | || || ||||| || || || | | |||||| ||| | Sbjct 3750 TAGCCGCATAGTAGATGGTCTCGAAGATCTTCTTGTTGAGCTCGCGGGCCTCCTCGCTCT 3691 Query 116219 CAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277 | ||||||| | || | || || | |||||||| || ||||| |||| ||| || Sbjct 3690 CGAACGCGA-AGTTCATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCCGATG 3632 Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATA 116337 ||||| || | ||| || ||||| || || ||||||| || | || ||||| Sbjct 3631 GGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGACGTCGATG 3572 Query 116338 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 116397 ||| | || || || |||| ||||| |||| || | ||||| | ||| || || Sbjct 3571 ACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGTAGTCGAAC 3512 Query 116398 CTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 116457 || ||| || ||| |||| || || || | || ||||| || ||||| | Sbjct 3511 ACGCC---CTCCTCC---ACAAACTTGGGCAGCGCCACCGAGGCCAGGTTGCACACGGCC 3458 Query 116458 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGG 116515 ||| || |||||||| || | || ||||| || || | || | Sbjct 3457 ACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGG--ATCG 3400 Query 116516 TGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCG 116575 |||| | ||||| || || ||||| ||| ||| |||||||||||||| | ||| Sbjct 3399 TGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAGGGCA 3340 Query 116576 TCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGG 116635 |||||||| | || | | || || || ||| || | || || | | | Sbjct 3339 CGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGCGTTGATCGT 3282 Query 116636 CGTTGGCTCGC--CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCAC 116693 | | || ||| ||||||| |||||||||| || |||| ||||||||| || ||| | Sbjct 3281 CTTGCGCGCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGCCC-C 3223 Query 116694 AGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCT 116752 ||| ||| |||| || || || | || || ||||| ||| ||| | ||| ||| Sbjct 3222 AGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTGGCCT 3163 Query 116753 CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA- 116811 | |||| ||||||||| || || || | ||| ||||| |||| || || || ||| Sbjct 3162 CCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCGCGGT 3103 Query 116812 GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCAC 116871 || || | | || || || |||| |||| || || | | ||||||||||| Sbjct 3102 GCAGCT-CGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGTGCCAG 3044 Query 116872 GGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTC 116928 || || ||||| | |||| || |||||||| | || |||||| || || | Sbjct 3043 GGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTAGCGG 2984 Query 116929 GCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC 116988 ||||| |||| || ||||| ||||| || ||||| |||| || ||| || || || Sbjct 2983 GCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCA 2924 Query 116989 CGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCAC 117048 || || || |||| | || | ||| ||| || || |||||||| |||||| Sbjct 2923 CGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCGGCCCAC 2864 Query 117049 TTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTA 117108 || ||||| ||||||| | |||| || ||||||| || || || ||||| ||| Sbjct 2863 TTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGTCCTGC 2804 Query 117109 TTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 117168 | || | ||||||||| ||||| |||||| | || || || ||||| || || || Sbjct 2803 ATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACAGTGTC 2744 Query 117169 GGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 117215 || |||||||| |||| | ||| ||||| ||||| ||||| Sbjct 2743 GGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTC 2697 >seq544 Length=17931 Score = 143 bits (158), Expect = 3e-29 Identities = 385/581 (66%), Gaps = 16/581 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | || ||| | ||||| Sbjct 6727 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCAT 6786 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 | || || |||||||| ||| | | | ||||| || | | | || || || Sbjct 6787 CCAGTCGAAGGGGTTCTTGACGTTGTAGAGCTTGGGCACGCCCAGCGAGTACAGCAGGCG 6846 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 || | ||| |||| ||||||| |||| | |||||||| |||||||| | || Sbjct 6847 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTC-CA 6905 Query 127411 TGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||| |||| ||| | | |||| | | ||| ||| || || || || ||||| ||| Sbjct 6906 CGGGCAGCGAGTCGCACACGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCGT 6965 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTC------CACAGCAA 127523 | | | | | | || | ||| | |||| |||| | ||| || | Sbjct 6966 GCACGCGGCTCTCGGGAAGTTTGTTGACCAG---CTTG--GAGTACATGAGGCAC-GCGA 7019 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || ||| | |||||||| ||| |||||| || || ||||||| ||| || |||| Sbjct 7020 AGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGGGCA 7079 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||| || |||||||| | |||||| || | || || ||||| ||||||||||| || | Sbjct 7080 TGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTT 7139 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA-CTTTGTATCAAACCAC 127702 | || |||||||| | |||||||| | | || || | | | || ||||| Sbjct 7140 CAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCACCAC 7198 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGT 127762 || | |||||| || ||||| |||| || || |||| |||| || || || || Sbjct 7199 TTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAACAGG 7258 Query 127763 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | ||||| || | ||| ||||||||| | || ||||| Sbjct 7259 TGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAG 7299 >seq2518 Length=24447 Score = 134 bits (148), Expect = 2e-26 Identities = 359/538 (67%), Gaps = 18/538 (3%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||||||||| ||||| || | || ||| | Sbjct 23786 CTTGGAGTACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCAT 23727 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || |||||||| | ||| | || | | ||| || | | | || Sbjct 23726 GTCCATCCAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTACAG 23667 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || || | ||| |||||||||||| ||||| | |||||||| ||||| || Sbjct 23666 CAGGCGGTCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAG 23607 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| || || | ||| | |||| | | ||| ||| ||| || || | |||| Sbjct 23606 CTCCACA-GGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGA 23548 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAGAGTTCC 127516 | |||| | | | || ||| | | || || | ||| | ||| | | Sbjct 23547 TCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGG-----C 23494 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 | || || || ||| | ||||| || ||| ||| || || |||||||||| |||| Sbjct 23493 AG-GCGAAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGA 23435 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||| || || |||||||| | |||||| || | || || ||||| ||||||||| Sbjct 23434 CCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAG 23375 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA-CTTTGTATC 127695 || ||||||||| |||||||| | |||||||| | | || || | | | || Sbjct 23374 ATGCCCTCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTC 23316 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCT 127753 ||||||| | |||||| || || || |||| || || |||| |||| || ||| Sbjct 23315 GCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCT 23258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613445212766280