Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 205 1e-47 >seq21 Length=30282 Score = 205 bits (226), Expect = 1e-47 Identities = 518/772 (67%), Gaps = 23/772 (3%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 |||||| |||||||||| ||||||| |||| | || || || |||||||| Sbjct 4397 CTTGTCGACCGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 4341 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 4340 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGATGTGAGCTTGCTGATGGT 4281 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 |||||||| ||||| ||||| || |||||||| ||| ||| ||||||| || || | Sbjct 4280 CGGGTCGGCGATGTGGATGTTGAGCGACTGGCTCTGGCAAATG-TAGGCGCCGCGGTCGG 4222 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | | || | | | || |||||| |||||||||||||||||| || || || Sbjct 4221 CCGACAGGTCCAGCACGGCCTTCTGTTTGATCTCCCACACCGTCTTGTACTTCTCCTTGA 4162 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 ||| | || | | | || | ||| | |||||| |||| || | ||| | Sbjct 4161 CGTGGTCCGGGATGGCCT-TGACCTTCTGCACGGAGCCGCTGTCATTCAGGA-TCTGGTT 4104 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | || | ||| ||||||| | |||||||||| || ||||| ||||| Sbjct 4103 GCGCACGTCGGGCGTCCAGATGCCCAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGAC 4044 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || || |||| |||||| | ||| || ||| |||| ||| | || |||| Sbjct 4043 GATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTACGGCTCGAT 3984 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | |||||||||||||| ||||| || || ||| ||||||||||| |||| ||||| Sbjct 3983 GGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGCCACCAGCAG 3924 Query 204313 GGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGC 204372 |||||||||| |||| || || | |||||| | | ||||| | || | Sbjct 3923 CGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGT--TCCACAGG 3866 Query 204373 ACTG-----GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 | | || | |||||||||||||||||||| |||||||| | ||| | || | Sbjct 3865 CCCGACGACGGGGTGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTGGCCGGCGAG 3806 Query 204428 CCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 |||| | ||||| || ||| || ||| | || | || || | |||| || Sbjct 3805 CCCTGGAACGTCTCGTACGGGCCGA-GCTCCTTGGCGATCTCCATGGACGTCTCCATAGC 3747 Query 204487 GTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTCCGTTCCGTCAA 204545 |||||| |||||||| ||||||| | || | || || ||||||| | || | Sbjct 3746 CGCATAGTAGATGGTCTCGAAGATCTTCTTG-TTGAGCTCGCGGGCCTCCTCGCTCTCGA 3688 Query 204546 ACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCC 204597 |||| | || | | ||| ||||||| | |||||| || ||||| || Sbjct 3687 ACGCGAAGTTCATGAGGATGAACGCGTCCGCGAGGCCCTGGACGCCGATGCC 3636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795074859506480