Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5227 170 2e-37 seq5738 165 9e-36 seq5736 161 1e-34 seq3557 113 5e-20 >seq5227 Length=11794 Score = 170 bits (188), Expect = 2e-37 Identities = 154/191 (81%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 2198 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 2257 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | ||| | || |||||||||| ||| |||| ||||| | | | Sbjct 2258 TCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 2316 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 2317 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 2376 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 2377 AAGATCTGCAT 2387 >seq5738 Length=44011 Score = 165 bits (182), Expect = 9e-36 Identities = 170/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| ||||||||| || ||||| || Sbjct 34500 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCG 34441 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||||||| | ||| | | ||||||| Sbjct 34440 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGCGGGATACCCTCCTTG 34381 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||| | ||| | | | || ||| || ||||| || | |||||| Sbjct 34380 TCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGAT 34322 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| |||||||||||||| || || ||||| ||||| ||| Sbjct 34321 GGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCTTG 34282 Score = 165 bits (182), Expect = 9e-36 Identities = 179/235 (76%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| ||||| || | | |||| |||||| |||| || |||||| ||||| ||||| Sbjct 34747 TTACTTGCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTA 34688 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||||||||| |||| |||||||||||| Sbjct 34687 GTCGCTCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 34628 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCG 46538 | ||| | | |||||||||| ||||||| ||| | ||| | | | || ||| || Sbjct 34627 AGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 34569 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || | ||||||||| |||||||||||||| || || ||||| ||||| Sbjct 34568 GCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 34514 >seq5736 Length=80658 Score = 161 bits (178), Expect = 1e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| || | || |||||| ||||| ||||||||| Sbjct 56843 TGCCACCACGCAGACGCAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGC 56784 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| |||||||||||||||||||| |||| ||||||||||| | || Sbjct 56783 TCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCG 56724 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 46543 | | || |||||||||| |||||| | ||||| ||| | | | || ||| || ||| Sbjct 56723 GGATGCCCTCCTTGTCCTGGATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 56665 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||| |||||| || ||||| ||||| || || || ||||| ||||| || Sbjct 56664 ACGTCCAGCGTGATCGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTT 56612 Score = 152 bits (168), Expect = 6e-32 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| || ||||| |||| || Sbjct 57052 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTC 56993 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||||||| |||| ||||||||||| | ||| | || |||||||||| Sbjct 56992 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 56933 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 |||||| | ||||| ||| | | | || ||| || ||||| |||| |||||| || | Sbjct 56932 GATCTTTTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCT 56874 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || ||||| ||||| Sbjct 56873 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 56843 >seq3557 Length=22309 Score = 113 bits (124), Expect = 5e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| || |||||||| ||||| |||||||| || |||||||| | Sbjct 8052 ACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCC 7993 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| |||||||||||| Sbjct 7992 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 7951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565181289725160