Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq544 352 3e-92 seq2518 313 2e-80 seq5738 149 6e-31 seq5736 132 5e-26 seq5227 122 9e-23 seq3557 95.1 1e-14 >seq544 Length=17931 Score = 352 bits (390), Expect = 3e-92 Identities = 599/856 (70%), Gaps = 28/856 (3%) Strand=Plus/Plus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || |||||||| ||||| || || || || || |||| || || || | ||| Sbjct 6728 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 6787 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 | || |||||||| ||||||| |||||| || ||| | ||||| | | Sbjct 6788 CAGTCGAAGGGGTTCTTGACGTTGTAGAGCTTGGGCACGCCCAGCGAGTACAGCAGGCGG 6847 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCAC 132788 |||||||||||||||||||| || ||||| | ||| | || | || | || ||| Sbjct 6848 TCGGCCACGAACTCGATGTACTGGCACATGAGCGTCG-AGTTCATGCCGATGAGCTCCAC 6906 Query 132789 CGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCC 132847 ||||||| ||| | ||| ||| ||||||||| ||| || || |||||| || Sbjct 6907 GGGCAGCGAGTCGCACACGAACTCGT-GCTCGATGGTGACGGCCTCACGGACGATCTCGT 6965 Query 132848 TAACGCGCGCCGCGCTCGGCC-----GTTGCACCAAATGCTTGAA---CATCAAGCAAGC 132899 ||||| || ||||| |||| |||| ||||| | ||| | ||| || Sbjct 6966 GCACGCG----GCTCTCGGGAAGTTTGTTG-ACCA---GCTTGGAGTACATGAGGCACGC 7017 Query 132900 AAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGG 132959 ||||| |||| ||||||||| | | ||||| |||||| ||| ||| |||||| Sbjct 7018 GAAGTCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGGG 7077 Query 132960 CATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCC 133019 |||||||||||| || |||||||| || |||| | ||| |||||| ||||||| ||| Sbjct 7078 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCC 7137 Query 133020 CTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCC 133078 || || || ||||| |||| ||| ||||| | ||| | | || || || || Sbjct 7138 TTCAACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC-GCGGGTCGCACC 7196 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 | |||||||| | ||||| | ||||||||||| ||||| || || ||| ||||| Sbjct 7197 ACTTGAGCGCCCAGTGCGCCTTCTTCTTGACGCACGGGATCGTCTCAATAGCGCGCAACA 7256 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGGTCGAATACATTT 133195 || | |||| ||| | | | | ||| ||||||||||| ||| || | | Sbjct 7257 ---GGTGGTTCTTCTCCATCGTATCCTTGATGTACGTGTCGATGAGCAGCGAGTAGACCT 7313 Query 133196 CCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCT 133255 | | ||| | |||||| |||||||| || |||||||| ||||| ||||||||| ||||| Sbjct 7314 CGGCGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGCACCT 7373 Query 133256 GCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 ||||||| | ||| | | |||| || ||||| |||||||||||||| || |||| Sbjct 7374 GCACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTCGCCGCGA 7433 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGC 133375 | ||||||||||||||||||||||| ||||||||||| ||| || ||||||| Sbjct 7434 AGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGCTTCTGCCAGTCGT 7493 Query 133376 GCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGT 133435 | ||| | |||||||| ||||||| | ||||| ||||| |||||||| || |||| Sbjct 7494 TCAGGTCGTGCACCAGGTCCAACTCCTCGGCCGTCCAGAACGAGGCCTCGGCCTTCTTGT 7553 Query 133436 ACATACTCCACATGTC 133451 |||| ||||| ||| Sbjct 7554 ACATCTGCCACACGTC 7569 >seq2518 Length=24447 Score = 313 bits (346), Expect = 2e-80 Identities = 626/912 (69%), Gaps = 22/912 (2%) Strand=Plus/Minus Query 132610 TATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATA 132669 || |||||||| ||||| || || || || || |||| || || || | ||| Sbjct 23779 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 23720 Query 132670 AAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTG 132729 | || || ||||| | ||||||| ||| | || ||| | ||||| | | Sbjct 23719 CAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTACAGCAGGCGG 23660 Query 132730 TCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCAC 132788 |||||||||||||| ||||| || |||| | || | || | || | ||| ||| Sbjct 23659 TCGGCCACGAACTCAATGTACTGGCACATCAGCGACG-AGTTCATGCCGATCAGCTCCAC 23601 Query 132789 CGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCC 132847 ||||| | ||| | ||| ||| ||||||||| || || ||| ||||| || Sbjct 23600 AGGCAGGGAGTCGCGCACGAACTCGT-GCTCGATGGTCACGGCATCGTGCACGATCTCGT 23542 Query 132848 TAACGCGCGCCGCGCTC-GGCCG-TTG--CACCAAATGCTTGAA---CATCAAGCAAGCA 132900 ||||| || ||| ||| | ||| ||||| ||||| | ||| | ||| || Sbjct 23541 GCACGCG----GCTCTCCGGCAGCTTGTTCACCA---GCTTGGAGTACATGAGGCAGGCG 23489 Query 132901 AAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 ||||| |||| |||||| || | | || || ||||| ||| ||| || ||| Sbjct 23488 AAGTCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGC 23429 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 || |||||||| || |||||||| || |||| | ||| |||||| ||||||| |||| Sbjct 23428 ATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCC 23369 Query 133021 TCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG-CGATCCA 133079 || || || ||||| |||| ||| ||||| | ||| | | || || || ||| Sbjct 23368 TCCACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGACGACACCC-GCGGGTCGCACCA 23310 Query 133080 GCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 |||||||| | || || | ||||||||||| ||||| || ||||| || || Sbjct 23309 CTTGAGCGCCCAGTGCGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCTCGCAGCAG 23250 Query 133140 ACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199 || ||||| ||| | | ||| ||||||||||| ||| |||| ||||| Sbjct 23249 GTGGTCCTTCTCCACCGCGTCCTTGATGTACGTGTCGATGAGCAGCGAGTACACCTCCGA 23190 Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259 ||| | |||||| |||||||| || || ||||| ||||| |||||||| ||||||||| Sbjct 23189 GTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGCGCCTCCGGCACCTGCAC 23130 Query 133260 TTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAA 133319 || | ||| | | |||| || ||||| ||||||||||||||||| ||||| || Sbjct 23129 CTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAA 23070 Query 133320 GGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGT 133379 ||||||||||||||||||||| ||||||||||| ||| | | ||||||| | | Sbjct 23069 GGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTC-CTTGA 23011 Query 133380 GTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACA 133438 | | || | |||||||| ||||||| | ||||| ||||||||||| || || ||||||| Sbjct 23010 GGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACA 22951 Query 133439 TACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCA 133498 | ||||| ||| | || || || || | ||| |||||| ||||| || || Sbjct 22950 TCTGCCACACGTCGTGCTCCTGGATCGGGAACAGCACGAACCGGTTCGGGTTCTCCACCA 22891 Query 133499 ACAGCGGCTCCG 133510 | |||||||| Sbjct 22890 GGAACGGCTCCG 22879 >seq5738 Length=44011 Score = 149 bits (164), Expect = 6e-31 Identities = 176/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||||| |||||||| |||||||| ||||||| ||| | Sbjct 34283 AAGATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCG 34342 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | | |||| | || | || || | ||||| ||||| || |||||| | Sbjct 34343 TCGGACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTAT-CCCGCCTG 34400 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | ||| ||||| |||||||| |||| ||||| || | ||||| Sbjct 34401 ACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACT 34460 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||||||||| |||||||||| || | || ||| Sbjct 34461 ACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 34513 Score = 149 bits (164), Expect = 6e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| |||||||| ||||||| ||| | | Sbjct 34514 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 34573 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || | || || | ||||| ||||| || |||||| |||| Sbjct 34574 GACTCGATCGACAACG-TGAAGCAGAAGATTCAGGACAAGGAGGGTAT-CCCGCCTGACC 34631 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| |||||||| |||| ||||| || | |||||||| Sbjct 34632 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGAGCGACTACA 34691 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||||||||| |||||||||| || | || ||| Sbjct 34692 ACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 34741 >seq5736 Length=80658 Score = 132 bits (146), Expect = 5e-26 Identities = 174/236 (74%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| Sbjct 56609 AAGAAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAG 56668 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | ||| | | |||| | || |||| |||| ||||| ||||| || ||||| Sbjct 56669 CCGTCGGACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAGGGCAT-CCCGC 56726 Query 38357 C-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | ||||| ||||| || || | ||| ||||| ||||| || |||| ||||| || | || Sbjct 56727 CTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCG 56786 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| ||||| |||| || || ||||||||||| || | || ||| Sbjct 56787 ACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTGCGTCTGCGTGGTGGC 56842 Score = 120 bits (132), Expect = 3e-22 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | ||||| ||| | | Sbjct 56843 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 56902 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||| | | |||| | || |||| |||| ||||| ||||| || |||||| |||| Sbjct 56903 GACTCGATCGACAACG-TCAAGCAAAAGATCCAGGACAAGGAGGGCAT-CCCGCCTGACC 56960 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| ||||| || |||| ||||| || | |||||||| Sbjct 56961 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTGAGCGACTACA 57020 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| |||| || || ||||||| || Sbjct 57021 ACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTTCG 57057 >seq5227 Length=11794 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| |||||||| | ||||| ||| | || Sbjct 2387 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 2328 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||||| | | | | || | ||||||| ||||| ||||| || |||||| ||||| Sbjct 2327 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCAT-CCCGCCTGACCA 2269 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 2268 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAA 2209 Query 38423 CATCCAAAAGG 38433 |||||| |||| Sbjct 2208 CATCCAGAAGG 2198 >seq3557 Length=22309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 ||||| ||| | ||||| ||||| || || | ||| ||||| |||||||| |||| ||| Sbjct 7939 GGAATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 7998 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 || || |||||||||||||| ||||| ||| |||||||| ||||||| ||| || | Sbjct 7999 ACTCTTTCGGACTACAACATCCAGAAGGAGAGC-ACGCTGCACCTGGTGCTTCGTCTGCG 8057 Query 38465 AGGCGG 38470 || || Sbjct 8058 TGGTGG 8063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500122263790720