Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq524 423 2e-113 seq2507 297 2e-75 seq1961 152 7e-32 seq7186 93.3 5e-14 >seq524 Length=22410 Score = 423 bits (468), Expect = 2e-113 Identities = 1056/1587 (67%), Gaps = 29/1587 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || |||| || || ||||| ||||| || |||||| |||||||| | | ||| Sbjct 12658 TCGTCTTGGTCCTTGTACTTCTCCGCGTCGGCGACCATGCGGTCAATGTCGGCCTGCGAC 12599 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || ||||| || ||||| ||||| ||||| | || |||| | ||| || | Sbjct 12598 AGTCGTCCCTTGTCGTTCGTGATCGTGATCTTGTTCTCCTTGCCCGTCGACTTCTCCACG 12539 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || || |||||||| || ||||||| ||||| | |||| || || || | Sbjct 12538 GCCGACACGTTTAAAATACCGTTCACATCAACGTCGAATGTAACATCGATCTGCGGGACA 12479 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || || || || | || || | || |||| | || || Sbjct 12478 CCGCGAGGCATGGGCGGGATGCCGTCCAGATTGAACTTGCCCAGTAGATGATTGTCGCGG 12419 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | | || || || || | |||| || ||| |||| || || || | Sbjct 12418 GTCATGGTGCGCTCGCCCTCGAACACTTGGATCAGCACACCAGGCTGGTTGTCCGCGTAC 12359 Query 6869 GTTGAGAA-GATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 || ||||| || | |||| ||| || || ||||| || || | |||||| | | || Sbjct 12358 GTCGAGAACGACTGCGTCTT-CTTGGACGGGATCGTTGTGTTACGCGGAATGAGCTTCGT 12300 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | ||||| || || || ||||| ||||| || | |||||||| | | ||| Sbjct 12299 CATGACTCCACCGGCCGTCTCCAGGCCAAGCGACAGCGGAGCCACGTCCAGCAACAGCAG 12240 Query 6988 GTCTTGAACAGATTCGTTCCCT--TCA---CCCGTTAAGATGGCGGCTTGGACCGTCGCC 7042 ||| |||| | || | | ||| || | | ||| || || || |||||||| Sbjct 12239 GTCCTGAA--GCTTGGACGACGAGTCATTGCCACTCAGGATAGCAGCCTGCACCGTCGCG 12182 Query 7043 CCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAA 7102 ||||| ||||| ||||| || ||||| |||| || ||| || || ||||| || | Sbjct 12181 CCGTACGCGACGGCCTCGTCCGGGTTGATCGACTTGAACAGCTCCTTGCCGTTGAAGAAG 12122 Query 7103 TCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCA 7162 ||| |||| || || | || ||||| || ||||| || || |||| ||| | || Sbjct 12121 TCCATCAACAACTGCTGCACCTTGGGGATACGCGTCGAGCCTCCAACCAGAACCACCTCG 12062 Query 7163 TTCACTTTCGATTTATCGAT--CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATAC 7220 ||||| | | || |||| ||| ||||| || || | | || || ||||| Sbjct 12061 TTCACCT--GGTTCTTCGACAGCTTGGAGTCGCGCAGGACCTGCGCCACCGGATCCATCG 12004 Query 7221 ATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 || ||||| || || | ||||| ||||| || || || || || |||| | | || Sbjct 12003 TCTTGCGGAAGAATTCGTTGCACAGGTCCTCGAACCGCGCGCGCGTGATGGTCGAGTTGA 11944 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACG 7340 | || |||||| | |||||||| || |||||| | ||| |||| || || | || Sbjct 11943 AGTCGGTGCCGTCCAACAACGAATCGATCTCAATGTACGCTTGCGCCGACGTGGACAGCG 11884 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 | ||||| |||||||| || || || || | ||||| | ||||| | ||| | | Sbjct 11883 TACGCTTCGCGCGCTCGCAGGCTGTACGAAGGCGACGCATCGCACGAGAGTTCACACTGA 11824 Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAAT 7457 |||| | |||||| || || ||||||| ||||| |||| ||| | | | Sbjct 11823 GATCTCTGCGATGTTTGCGCTTGAACTCTTGCACGAAGTACTCGACCAGGCGGTTG---T 11767 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 |||| || || || |||| ||| || || || || || || || || || ||||| ||| Sbjct 11766 CGAAGTCCTCGCCGCCCAGGTGCGTGTCTCCGGCCGTGGCCTTCACCTCGAAGATGCCTT 11707 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 |||| || ||| | ||| ||||||||||| || || ||||| || || || | |||| Sbjct 11706 CTTCGATCGTTAGGAGCGACACATCAAACGTCCCGCCTCCCAGATCGAAGATCAACACGT 11647 Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | || | ||||| || || ||||| || || ||||| ||||| ||||||| Sbjct 11646 T-GTGT--TCCCCGCCCTTCTTGTCCAGGCCGTAGGCAATGGCCGCGGCCGTGGGTTCAT 11590 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || ||||| || |||||| ||||| || | | || || || || ||||| || | Sbjct 11589 TGATGATACGCAGGACGTTCAGCCCAGCGATCGCACCGGCGTCCTTGGTAGCTTGGCGCT 11530 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| || || || || ||||| || || |||| | |||||| ||| |||| | Sbjct 11529 GGGAGTCGTTGAAATACGCTGGCACCGTAACCACGGCGTTCTTGACTTGCTTGCCGATGT 11470 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 ||| || ||||| || ||| ||| | || ||||| || || ||||| || | | | Sbjct 11469 ACGCCTCGGCGATCTCGCGCATCTTGATCAGCACCATGGACGAGATCTCCTCGGGCTGGA 11410 Query 7818 ACTGTTTCGTTTCACCGTTAAAAT-CAACTTCAATCATG-GGTTTATCCGCAGCACCGGG 7875 || || | || || || || | || | || | || || || | | | | || | Sbjct 11409 ACGTCTTGGACTCGCCCTTGAACTGCACCACCAGT--TGCGGCTTGTTCTCCGGGCCTCG 11352 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||| ||| ||| | || || || || |||| |||| | ||||| | Sbjct 11351 AGCAACTTTAAACGGCCAGTGCTTGATGTCCGACTGCACCTCCGGGTCGGTGAACTTGCG 11292 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| | ||||| | || || || ||||| | | ||||||||| |||||||| Sbjct 11291 GCCGATCAAGCGCTTGACGTCGAACACCGTGTTGTGCGCGTTCATGGCCACCTGGTTCTT 11232 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || ||||| ||||| || | ||||| || || |||||||| ||||| || Sbjct 11231 GGCGGCATCGCCGATCAGACGCTC---GGTGTCCGTGAAGGCCACGTACGACGGGGTGGT 11175 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || || || || ||||||||||| ||||| ||||||||||| Sbjct 11174 GCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCA 11115 Query 8116 CGAATACGTTGTTCCTAAATCAATACC 8142 ||| || || || || | ||||||||| Sbjct 11114 CGAGTAGGTCGTGCCCAGATCAATACC 11088 >seq2507 Length=28097 Score = 297 bits (328), Expect = 2e-75 Identities = 583/858 (68%), Gaps = 12/858 (1%) Strand=Plus/Minus Query 7290 CGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTG 7349 ||||||| | ||| || || |||||| | || |||| ||| || | ||| ||||| | Sbjct 2120 CGTCGTACAGCGAGTCGATCTCAATGTACGCCTGCGCCGACGATGACAGCGTACGCTTGG 2061 Query 7350 CGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCT 7409 |||| || ||||| | || | ||| || || || || | || | | || || Sbjct 2060 CGCGTTCGCACGCGATACGGAGACGCCGCAGCGCGCGTTGATTCTGCGTCAGGTCCTTGC 2001 Query 7410 TATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTT 7466 || || || || ||||| | ||||| |||| ||| | | ||||| || | Sbjct 2000 GGTGCTTGCGCTTGAACTCCTGCACGAAGTACTCGACCAGGCGGTTG---TCGAAGTCCT 1944 Query 7467 CACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGT 7526 | || |||| ||| ||||| || ||||| || || || || ||||| || | |||||| Sbjct 1943 CGCCGCCCAGGTGCGTATCACCAGCGGTAGCCTTCACCTCGAAGATGCCCTCCTCAATGG 1884 Query 7527 TTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT 7586 | || ||| ||||| || || || ||||||||||| || || || ||||| ||| Sbjct 1883 ACAGCAGCGACACATCGAAGGTGCCGCCACCCAGGTCGAAGATCAGCACGTTGCGCTCGC 1824 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 || | || ||| || || ||||| || || ||||| ||||| || || ||||| |||| Sbjct 1823 CGCCCTT---CTTGTCCAGGCCGTAGGCAATGGCCGCGGCCGTCGGCTCGTTAATGATAC 1767 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 | || ||||||||||||||| | | || || || || || || || ||||| |||| Sbjct 1766 GCAGGACGTTCAGGCCAGCAATGGCACCGGCGTCCTTGGTAGCCTGGCGCTGCGAGTCGT 1707 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 | |||||||| || ||||| | || |||| | |||| | ||| |||| | | || | Sbjct 1706 TGAAGTAGGCGGGCACCGTGATCACGGCGTTCTTGACCTCCTTGCCGATGAAGGCCTCGG 1647 Query 7767 CGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 | | || ||| ||| | || ||||| || || ||||| || | | ||| || | Sbjct 1646 CCACCTCGCGCATCTTGATCAGCACCATGGACGAGATCTCCTCGGGCTGGAACGTCTTGG 1587 Query 7827 TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTAT 7886 || || || || | || ||| || || || | || || | | ||| Sbjct 1586 ACTCGCCCTTGAACTGCACCGTGATCTGCGGCTTGTCGCCGGCGCCCGACGAGATCTTGA 1527 Query 7887 ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGAC 7946 ||| ||| | || || || |||| ||| |||| || ||||| | ||||| |||| Sbjct 1526 ACGGCCAGTGCTTGATGTCTGCTTGCACCACCGGGTCGGAGAACTTGCGGCCGATCAGAC 1467 Query 7947 GCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCC 8006 | || || || || || ||||| | | ||||||||| |||||||| || || || | Sbjct 1466 GTTTGGCGTCGAACACCGTGTTGTGCGCGTTCATGGCCACCTGGTTCTTGGCGGCATCGC 1407 Query 8007 CGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTT 8066 |||| || || || | ||||| || || |||||||| ||||| || || || || | Sbjct 1406 CGATCAGGCGCTC---GGTGTCCGTGAAGGCCACGTACGACGGGGTGGTGCGGTTACCCT 1350 Query 8067 GGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTG 8126 ||||||| || || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 1349 GGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCACGAGTAGGTCG 1290 Query 8127 TTCCTAAATCAATACCGA 8144 | || | ||||| |||| Sbjct 1289 TGCCGAGGTCAATGCCGA 1272 Score = 134 bits (148), Expect = 2e-26 Identities = 315/474 (66%), Gaps = 11/474 (2%) Strand=Plus/Minus Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 ||||| | || | |||||| || | | || | || ||||| | ||| || || Sbjct 2588 TTCTTGGTGGGCACCGTCGTGTTACGGGCGATCAGCGTCGTCATGACACCGCCGGCCGTC 2529 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTC 7006 || || || ||||||||||| ||||| |||| || | |||||| || ||| ||| || Sbjct 2528 TCCAGACCCAGAGACAGAGGCGTCACATCCAGCAGCAGCAGGTCCTG--CAGCTTC--TC 2473 Query 7007 C-------CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059 | | | || | | |||||| || || ||||| || ||||| ||||| ||||| Sbjct 2472 CGAGGAGTCGTTGCCGCTCAGGATGGCCGCCTGCACCGTGGCGCCGTACGCGACGGCCTC 2413 Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTG 7119 || ||||| |||| || || | || || ||||| || | ||||| | || || || Sbjct 2412 GTCCGGGTTGATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCCGACAGCAGCTGCTG 2353 Query 7120 AATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATC 7179 | || ||||| || || || || ||||| | |||| || | ||| | || Sbjct 2352 CACCTTGGGGATACGCGTAGAGCCGCCGACGAGGACGACCTCGTGCACCTGGCTCTTGGA 2293 Query 7180 GATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCAT 7239 || ||| | ||| || || || || || || ||||| || ||||| |||| Sbjct 2292 GAGCTTGGCGTCGCGCAGCACCTTCTCCACGGGCTCCATGGTCTTGCGGAAGTAGTCGCC 2233 Query 7240 ACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAA 7299 |||| ||||| ||||| || || || |||| | | ||| |||| ||||||||| | Sbjct 2232 GCACATGTCCTCGAAACGCGCGCGCGTGATGGTGGAGTTGAAGTCAATGCCGTCGTACAG 2173 Query 7300 CGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 ||| || || |||||| | || |||| ||| || | ||| ||||| ||||| Sbjct 2172 CGAGTCGATCTCAATGTACGCCTGCGCCGACGATGACAGCGTACGCTTGGCGCG 2119 >seq1961 Length=1301 Score = 152 bits (168), Expect = 7e-32 Identities = 189/258 (73%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 7887 ACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGAC 7946 ||| ||| | || || ||| | ||||| ||||||| ||||| | ||||| |||| Sbjct 21 ACGGCCAGTGCTTGATGTCGGCCTGGACGATCGGGTCCGAGAACTTGCGGCCGATCAGAC 80 Query 7947 GCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCC 8006 |||| || || || || ||||| | | ||||||||| |||||||| || || || | Sbjct 81 GCTTGGCGTCGAACACCGTGTTGTGCGCGTTCATGGCCACCTGGTTCTTGGCGGCATCGC 140 Query 8007 CGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTT 8066 |||| || || || | | |||| || || |||||||| ||||| || || || || | Sbjct 141 CGATCAGGCGCTCGGTGT---CCGTGAAGGCCACGTACGACGGGGTGGTGCGGTTACCCT 197 Query 8067 GGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTG 8126 ||||||| || || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 198 GGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACACGCCGACGCACGAGTAGGTCG 257 Query 8127 TTCCTAAATCAATACCGA 8144 | || | || || |||| Sbjct 258 TGCCGAGGTCTATGCCGA 275 >seq7186 Length=25552 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/288 (68%), Gaps = 11/288 (4%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||||| ||| || || || | || | ||||| || ||||| || Sbjct 13054 TCGAAGTCCTCGCCACCCAGGTGCGTGTCACCGCCCGTGGACTTGACCTCGAAGATGCCG 12995 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||| ||||| || ||||| ||||||||||| || ||||| ||| Sbjct 12994 TTCTCGATCGACAGGATCGACACATCGAAGGTACCGCCACCCAGGTCGAAGATGAGCACG 12935 Query 7577 TT------CGTATCGTC---GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 || | | |||| | | |||| | || || ||||| |||| || || ||| Sbjct 12934 TTGCAGGCCTTGCCGTCCGTGCCGGCGTTCGTGTCCAGGCCGTAGGCGAGGGCAGCGGCC 12875 Query 7628 GTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGT 7686 || || || || || ||||| ||| || ||||||||| || | | || || || || Sbjct 12874 GTGGGCTCGTTGATGATACGCTTGAC-GTCCAGGCCAGCGATCGAACCGGCGTCCTTGGT 12816 Query 7687 CGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 || || || ||| ||||| |||||||| || || || || || || Sbjct 12815 CGACTGACGCTGCTGGTCGTTGAAGTAGGCGGGCACGGTGACCACAGC 12768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635068627769720