Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq21 178 2e-39 seq544 109 7e-19 seq2518 107 2e-18 seq122 86.0 8e-12 seq2056 82.4 9e-11 >seq21 Length=30282 Score = 178 bits (196), Expect = 2e-39 Identities = 460/695 (66%), Gaps = 7/695 (1%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || ||||| ||||||| |||||| |||||||| | || | || || || Sbjct 2568 TACTTTGGCTTCAAGACGCTCGAGCGCGGCTACCTCTTCCGCGTGAACGGCAAGGTGGTG 2627 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 || ||| ||| | ||| | ||||| || ||| | || ||||| | || ||| | Sbjct 2628 GAGCGCCCGCAGCAGATGATTATGCGCGTGGCGCTGGGCATCCACAAGAGCGACATTAAG 2687 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 | | | ||||| ||||| ||||| | | |||| ||||| || || || Sbjct 2688 GCCGCCCTCGAGACGTACGAGCTCATGTCGCAAAAGTTTTTCACGCACGCGACCCCGACA 2747 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || || ||||| || || || | || ||| |||| || ||||| | || | || Sbjct 2748 CTGTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCCTGCTTCCTGTTGGCCATGCAG 2807 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || || | ||||| |||| ||| |||| | || || ||||| |||||| Sbjct 2808 GACGACTCCATTGAGGGCATCTACGACACGCTCAAGCAGTGCGCGTGCATCTCCAAGTGG 2867 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGT 111905 || || |||||||| || ||| || | || | |||| || || | || Sbjct 2868 GCCGGGGGTATCGGCATCAGCATGCACAACATCCGCGCCACGAATAGCTACATCCGTGGC 2927 Query 111906 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || || || || |||| || || || ||||| ||||| || |||| ||| || ||| Sbjct 2928 ACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGCGTGTTCAACGACACGGCCCGC 2987 Query 111966 TATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || || |||| | || | |||||||| || |||| |||| |||||||| ||| Sbjct 2988 TACGTGGACCAGGGCGGAGGCAAGCGCAAGGGCTCGTTCGCCATCTACCTTGAGCCCTGG 3047 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 |||||||| | | |||||||| || |||| ||||| || | ||| | | | | Sbjct 3048 CACGCGGACGTGTTCGAGTTCCTGGACCTGCGCAAGAACCACGGCAACGAGCTG-CACCG 3106 Query 112083 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 || ||||| || |||| ||| || ||| | || ||||| ||||||||||| || |||| Sbjct 3107 CGCGCGCGACCTGTTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGC 3166 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 | |||||| ||| ||| || || || | | || || || |||| ||| ||| | || Sbjct 3167 CAATGGCAAGTGGAGTCTGTTCTGCCCCAATGAAGCCCCTGGACTCTACGAGTGCTG-GG 3225 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 | ||||||||||| |||| || |||||||||| Sbjct 3226 GCGAGGAGTTTGAGACCCTTTATGAAAAGTACGAG 3260 >seq544 Length=17931 Score = 109 bits (120), Expect = 7e-19 Identities = 190/272 (70%), Gaps = 12/272 (4%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGAT--GGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCC 102105 ||||| |||| ||| || |||||| | || |||||||| || || || || || Sbjct 7299 CTCATCGACACGTACATCAAGGATACGATG--GAGAAGAACCACCTGTTGCGCGCTATTG 7242 Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG- 102164 | || | || || | | ||||| ||| | ||||| | ||||||| || | | Sbjct 7241 AGACGATCCCGTGCGTCAAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGG 7182 Query 102165 --TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTC 102221 ||| ||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 7181 TGTCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCGGTTGAAGGCATCTTCTTC 7126 Query 102222 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 102281 || || ||||||||| | || | |||||||||||||| || |||||||| || || || Sbjct 7125 TCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGAGC 7066 Query 102282 TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||||||||||| ||| || |||||||| Sbjct 7065 TTCTCCAACGAGCTCATCAGCCGCGACGAGGG 7034 >seq2518 Length=24447 Score = 107 bits (118), Expect = 2e-18 Identities = 187/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| | | |||||| | || || | |||||| | Sbjct 23208 CTCATCGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGAGCCATTGAG 23267 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAG--- 102164 || | || || | | ||||||||| | ||||| | ||||||| || | | Sbjct 23268 ACGATCCCGTGCGTCAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGGGTG 23327 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 23328 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCTGCTGTGGAGGGCATCTTCTTCTC 23383 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || || ||||| ||||| |||| Sbjct 23384 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGTCTGAGCTT 23443 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| || || ||||| Sbjct 23444 CTCGAACGAGCTGATCAGCCGCGATGAGGG 23473 >seq122 Length=11168 Score = 86.0 bits (94), Expect = 8e-12 Identities = 325/498 (65%), Gaps = 19/498 (4%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||||||||| |||||| | || |||||| | || ||| ||||| || Sbjct 3292 ACGGTCAAAGCGACCGGGGCGACACAATGCCGGATCAAGCACCTCCGGGCGGTTCGTAGC 3351 Query 15944 GGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTG 16000 ||| ||||| | || || | |||| ||||| |||||||||||||||| | ||| Sbjct 3352 GGCAATGACGATAACTCCATTGACGTTTCCCTCAAAGCCATCCATCTCTGTCAGCAACTG 3411 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCG-CTGGCATACCACCAGCACTGCGTTGCTTT- 16058 ||| | || || ||||||||||| || | | | || ||||| ||| ||||| Sbjct 3412 GTTCAGCGTCTGCTCCCGTTCATCGTTGGAGTTGAAT-CCACC------GCG-AGCTTTA 3463 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC- 16117 ||| ||||| || || ||||| |||| ||| || | | | | ||||| | || | Sbjct 3464 GCCAACGCATCGATTTCGTCAATAAAGATGATACACTGCGGGTACT-GCGAG-GCCTGCG 3521 Query 16118 -AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 ||||| ||||| || | | ||||| ||| || | |||||| || || | | | Sbjct 3522 TGAAGAGGTCCCGCACTCTCGCAGCGCCTCGACCCACCAGCATCTCGACGAAATCCGACG 3581 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 | || || | ||||| || | |||| |||| |||| || || || |||| Sbjct 3582 CTGAGCAGAACAAGAAGGCCACCCCCGCTTCAGATGCAACAGCTCTAGCCAGCAGCGTCT 3641 Query 16237 TACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAA 16296 | || || || | ||| ||| | | ||| || | ||||||||| | | Sbjct 3642 TGCCGGTGCCCGATGGACCGCAGAGCATCACTCCTTTGGGCACTTTGGCGCCAATGGCCT 3701 Query 16297 AGTATCTCTCAGGTTG-CTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCG 16355 ||| || | || || || ||| || ||||||| ||| |||| || | ||||| | Sbjct 3702 GGTACCTGGCCGGGTGTCTCAAG-AAGTCCACAACCTCCTCCAGCTCCTTCCTGGCGCCA 3760 Query 16356 TCAATCCCCTCAACATCG 16373 ||||| ||| | |||||| Sbjct 3761 TCAATACCCGCCACATCG 3778 >seq2056 Length=43087 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || |||||||| || ||||||| |||||| || | || ||| | ||||| | || | Sbjct 37470 GCGTCAATCTCGTCGATGAAGATGATGCACGGC-GCCTTCCGCTTGGCCGACT-CGAACA 37527 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || ||||| ||||| || ||||| |||||||| | || | | | | || Sbjct 37528 GGTCGCGCACACGTCGCGCGCCGACGCCAACGTACATCTCCTCGAACTCGGAGCCCGACG 37587 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || |||||| || | ||||| || ||||| |||||||| | |||||||||| Sbjct 37588 AGTAGAAGAAGGGCACGCCGGCCTCACCAGCGATGGCGCGGGCGAGCAACGTCTTACCCG 37647 Query 16243 TACCTGGC 16250 |||| ||| Sbjct 37648 TACCGGGC 37655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620679681739760