Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq21 167 3e-36 seq1107 125 8e-24 seq2056 96.9 4e-15 seq1091 95.1 1e-14 seq2518 86.0 7e-12 >seq21 Length=30282 Score = 167 bits (184), Expect = 3e-36 Identities = 878/1386 (63%), Gaps = 38/1386 (3%) Strand=Plus/Minus Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 ||||||||| | || || || || || ||| ||| ||| ||||| | |||||| Sbjct 4052 CTTGTTGACGATCGTGAACTCGCCGGCCAGCACGCGGCGGTTGTACATGTTGGACGTGTA 3993 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 || |||| |||| |||||||| ||||| || || || || || ||||||||||| || Sbjct 3992 CGGCTCGATGGACTCGTTGTTGCCGAGGATCTGGGCCGTCGAGGCAGTGGGCATGGGGGC 3933 Query 109830 CATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATC 109889 || || || ||| || || || | | | | || ||| || || |||| | Sbjct 3932 CACCAGCAGCGAGTTGCGCAGGCCGTGCTTGATCACGTTCTCCTTCAGCGCCGCCCAGTT 3873 Query 109890 ATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGC 109949 | | || | || | || |||||| || || | | |||| Sbjct 3872 CCACAGGCCCGACGACGGGGTGACGCC---CCACATGTCGAACTGGAAGATGCCCTTGCT 3816 Query 109950 AGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGC 110009 || || || |||| ||| ||||||||| || ||| ||| | ||| || | Sbjct 3815 GGCCGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGCTCCTTGGCGATCTCCATGGACGT 3756 Query 110010 CTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAG---GCGAGACTC 110066 ||| | ||||||| || || ||||| || || | || |||| ||| | ||| Sbjct 3755 CTCCATAGCCGCATAGTAGATGGTCTCGAAGATCTTC---TTGTTGAGCTCGCGGGCCTC 3699 Query 110067 TTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGA 110125 || | ||||| | |||| || | || | ||| | ||||| || ||||| || |||| Sbjct 3698 CTCGCTCTCGAACGCGAAGTTCATGAGGA-TGAACGCGTCCGCGAGGCCCTGGACGCCGA 3640 Query 110126 GACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGC 110185 || |||||||| || |||||| || || || | |||||||| ||||| Sbjct 3639 TGCCGATGGGGCGGTGGCGCATGTTGGACTTGCGCGCCTCGGCCACGGGGTAGTAGTTGA 3580 Query 110186 GGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGT 110245 |||||||||| || || || ||| | ||| |||| || | ||| || | || Sbjct 3579 CGTCGATGACCTTGTTCAGGTTGCGCGTGATGACCTTGGTGACCTCGTAGAGCTTCTGGT 3520 Query 110246 AATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGC 110305 | |||||| | |||| ||| | ||||| || || | || || || |||| Sbjct 3519 AGTCGAACACGCCCTCCTCC------ACAAACTTGGGCAGCGCCACCGAGGCCAGGTTGC 3466 Query 110306 ACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG---GAAC 110362 |||| | |||||| | ||||| |||| | || ||||||||| || | Sbjct 3465 ACACGGCCACCTCGTCGGGGGACGTGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGC 3406 Query 110363 TCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCA 110422 | || || | ||||| ||| ||||| || |||| || ||||| ||||||| Sbjct 3405 GGATCGTG---CCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCA 3349 Query 110423 TGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGG 110482 || | || || || || |||| | | || ||||| ||| || | || ||| Sbjct 3348 TGAAGGGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCA--CAGCTGCTGCGC 3291 Query 110483 G--GACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAAT 110538 | || || |||| ||| | || |||| ||||||||| || | | |||||| Sbjct 3290 GTTGATCGTCTTGCGC--GCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAAC 3233 Query 110539 TCCTGTCCGTA-CACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATT 110597 |||| || | ||| || | || || || | | ||| ||||| || ||| || Sbjct 3232 TCCTCGCCCCAGCAC-TCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTT 3174 Query 110598 TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 ||| |||| ||||||||||||||||| || || | ||||| ||| |||| ||||| Sbjct 3173 GCCATTGGCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTC 3114 Query 110658 ACG-GCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATAT 110716 || || | || | || | || ||||| ||| || |||| || || | | | Sbjct 3113 GCGCGCGCGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGT 3055 Query 110717 CCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGT 110773 ||| |||||| || || || |||| |||| || ||||| || | || |||||| Sbjct 3054 CCGCGTGCCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGT 2995 Query 110774 TAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGAC 110833 || ||||| || ||| | ||||| || | ||||| || || || |||| ||| | Sbjct 2994 CCACGTAGCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGC 2935 Query 110834 CATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATAC 110893 | || || || | || | || |||| || |||| ||| || || || |||| Sbjct 2934 CGTTCGTGCCACGGATGTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATAC 2875 Query 110894 CACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCG 110953 | || |||||||| || || |||| |||| || | || || || ||||| | Sbjct 2874 CCCCGGCCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGG 2815 Query 110954 AATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCAT 111013 | || ||| |||| | || ||||| || |||| || || || ||||| || || | Sbjct 2814 AGTCGTCCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGT 2755 Query 111014 TGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGA 111073 | || ||||| || ||||| || |||| | ||| ||||| | ||| || |||| Sbjct 2754 TAAACAGTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGA 2695 Query 111074 GTGCGG 111079 | |||| Sbjct 2694 GGGCGG 2689 >seq1107 Length=28659 Score = 125 bits (138), Expect = 8e-24 Identities = 340/511 (67%), Gaps = 17/511 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | ||||| |||||| | ||||| Sbjct 23861 ATCTGGCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGGATATCGGCGCGGTTC 23802 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | || ||| | || |||||| ||||| || || Sbjct 23801 GTACCAGCAAGCACCACCACACC---CTCGCTCGAGTTGAAACCATCCATCTCGACCAGC 23745 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | |||||| | ||| | |||||||| |||||| | | | | |||| ||| | Sbjct 23744 AACTGGTTCAGCGTGTTCTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTAC 23687 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||| || || || || ||||| ||||| ||||| || || || | Sbjct 23686 GTGCGCGGGCCACAGCATCGATTTCGTCAATGAACACGATGCACGGGGCATTCGCGCGCG 23627 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| ||||| || || ||||| ||||||||||||| ||| | Sbjct 23626 CCTCCTTGAACAGGTCACGCACACGGGACGGACCCACACCGACGAACATCTCAATGAAAT 23567 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | || | ||||| ||| || || | | |||||||||| | || || || Sbjct 23566 CCGAACCGGAGATGCTGAA-GAAAGGCACGCTGGCCTCACCAGCGGTAGCCTTCGCCAGC 23508 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC- 11906 || |||||||||||||| || | ||| | || || ||||| ||||||||| ||||| Sbjct 23507 AGCGTCTTACCCGTACCGGGCGGGCCAACAAGCAGCGCGCCCTTGGGGATCTTCGCACCG 23448 Query 11907 ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTT 11966 | ||| | |||||| | || ||||||||||| | |||| | |||| ||| Sbjct 23447 AGCTCC-GTGAAGCGCTTCTGATTACGAAGGAAGTCCACGAACTCCATGATCTCCTTCTT 23389 Query 11967 GGCGGAGTCGATACCCTCAACATCGGTGAAA 11997 ||| ||| | ||| | || || ||||| Sbjct 23388 GGCCTCGTCCACACCGGCCACGTCCTTGAAA 23358 >seq2056 Length=43087 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT-TC 11735 |||| |||||||||||| |||||||| | ||| ||||| || | | || | | || Sbjct 37464 CCGATAGCGTCAATCTCGTCGATGAAGATGATGCACGGCGCCTTC-CGCTTGGCCGACTC 37522 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || ||||| ||| || || || ||| ||||||| |||| | | | | Sbjct 37523 GAACAGGTCGCGCACACGTCGCGCGCCGACGCCAACGTACATCTCCTCGAACTCGGAGCC 37582 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 || | | | |||||| || | ||||||||||||||| || ||||| | ||||| Sbjct 37583 CGACGAGTAGAAGAAGGGCACGCCGGCCTCACCAGCGATGGCGCGGGCGAGCAACGTCTT 37642 Query 11856 ACCCGTACCAGGTGCACCAG 11875 ||||||||| || | ||||| Sbjct 37643 ACCCGTACCGGGCGGACCAG 37662 >seq1091 Length=38999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || || || || || || || | |||||| ||||| || | ||||| | ||| Sbjct 10764 TTACCGCGCAGCGGGAACACGCCGTAGTAATCTCTGCCCACCACAGCAAGACCGCCCACA 10705 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| || || || ||||| |||||||| | ||| || || || | || || | | Sbjct 10704 GCGACCGTCTTGGCGGAATCTCCCTCTGTGAGGATCAGAGTGCAGT--CCTTGCTCTTGG 10647 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGTGA 168592 |||||||||| | ||| || ||||||| ||||||||||| |||| Sbjct 10646 CCGTACCAGCGTGGTTGGCGTCGTCCAGCTTGGGGATACCCGTGA 10602 >seq2518 Length=24447 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/217 (69%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||| ||||| || ||||| || |||||||| || || | ||| Sbjct 23473 CCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATCAGGCCGCGCTTC 23414 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || || || || |||||||||||||||||| ||||| Sbjct 23413 TTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCAGCGAAC 23354 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGA----CTTGTCGAACCACTTGAGAGCCCAGTT 119689 || | |||||||| | | | ||| | | |||| |||||||||| ||||||| Sbjct 23353 GCCAGCAGACGCTCCG-GGTACGACGACACCCGCGGGTCGCACCACTTGAGCGCCCAGTG 23295 Query 119690 GGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCT 119726 || || || | ||| |||| || | |||||| Sbjct 23294 CGCTTTCTTCTTGACGCACGGGATCGTCTCAATGGCT 23258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588916491337400