Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22] 8,083 sequences; 58,815,051 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 190 2e-43 seq2518 109 6e-19 seq544 95.1 1e-14 >seq21 Length=30282 Score = 190 bits (210), Expect = 2e-43 Identities = 509/766 (66%), Gaps = 13/766 (2%) Strand=Plus/Minus Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603 ||||| || | |||| ||||| ||| |||| ||| ||||||||||||||| || Sbjct 3403 ATCGTGCCGAGGTTCTGCTGGTTCGACTTCCGGTTGACCGCGTCCTTGTAGAGCATGAAG 3344 Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTA 106661 ||| |||||||| |||| | | || || || ||||| | | ||| | || | Sbjct 3343 GGCACGCCCGTCTCGATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGCGCGTTGATC 3284 Query 106662 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | ||| || ||||||||| |||||||||| || |||| ||||||||||| | Sbjct 3283 GTCTTGCGC--GCGCGTCCCTCCTTCTCGTACTTTTCATAAAGGGTCTCAAACTCCTCGC 3226 Query 106722 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 || | || ||| |||| || || || | | || ||||| ||| ||| | ||| Sbjct 3225 CC-CAGCACTCGTAGAGTCCAGGGGCTTCATTGGGGCAGAACAGACTCCACTTGCCATTG 3167 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACA 106839 |||| |||| ||||||||| || || || | |||||| | | || || || | | Sbjct 3166 GCCTCCACCCTCTTCATGAACAGATCGGGCACCCACAGCGCGTAGAACAGGTCGCGCGCG 3107 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 | | || | |||| || ||||| || | || |||||||| | | |||||||| Sbjct 3106 CGGTGCAGC-TCGTTGCCGTGGTTCTTGCGCAGGTCCAGGAACTCGAACACGTCCGCGTG 3048 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATA 106956 ||| |||||||| |||| |||| || ||||| || | || | || | || || Sbjct 3047 CCAGGGCTCAAGGTAGATGGCGAACGAGCCCTTGCGCTTGCCTCCGCCCTGGTCCACGTA 2988 Query 106957 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 107016 ||| || ||| |||| || ||||| ||||| || || || |||| || || || || Sbjct 2987 GCGGGCCGTGTCGTTGAACACGCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGT 2928 Query 107017 CCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAG 107075 || || || || | || |||| | | | || ||| || || |||||||| | Sbjct 2927 GCCACGGAT-GTAGCTATTCGTGGCGCGGATGTTGTGCATGCTGATGCCGATACCCCCGG 2869 Query 107076 CCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCT 107135 ||||||| ||||| ||| |||| | | || || | ||||| || | || ||||| | Sbjct 2868 CCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCAATGGAGTCGT 2809 Query 107136 CCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGA 107195 ||| |||| | |||||||| |||| || || | || || || || || || | Sbjct 2808 CCTGCATGGCCAACAGGAAGCAGGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAACA 2749 Query 107196 GGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAG 107255 | || || || ||||| |||| | ||| ||||| ||||| ||||| | | | | Sbjct 2748 GTGTCGGGGTCGCGTGCGTGAAAAACTTTTGCGACATGAGCTCGTACGTCTCGAGGGCGG 2689 Query 107256 AATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 | |||||| | ||||||||| | ||||| ||||||| ||| Sbjct 2688 CCTTAATGTCGCTCTTGTGGATGCCCAGCGCCACGCGCATAATCAT 2643 >seq2518 Length=24447 Score = 109 bits (120), Expect = 6e-19 Identities = 333/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 23779 TACTCGCCCACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 23720 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||||||||| | || | ||| |||| | || || || || Sbjct 23719 CAGTCGAACGGGTTCTTCGCGTTGTAGATCTTCGACACGCCCAGCGAGTAC-AGCAGGCG 23661 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||||||||||| | ||||| | |||||||| ||||| || | || Sbjct 23660 GTCGGCCACGAACTCAATGTACTGGCACATCAGCGACGAGTTCATGCCGATCAGCTCCAC 23601 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | || || | ||| | |||| | | ||| || || || || | |||||| ||| Sbjct 23600 A-GGCAGGGAGTCGCGCACGAACTCGTGCTCGATGGTCACGGCATCGTGCACGATCTCGT 23542 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| || ||| || Sbjct 23541 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CA-GGCGAAG 23486 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | |||||||| ||| || || || || ||||||| || || ||||| Sbjct 23485 TCCGTGTGCATGCCCTCATCGCGGCTGATCAGCTCGTTCGAGAAGCTCAGACCAGGCATC 23426 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | || | |||||| || || ||||||||||| |||||| Sbjct 23425 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 23366 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGA-CTTTGTGTCAAACCATTT 117458 ||| || ||||| | || ||||| | | | || ||| | | | ||| |||| || Sbjct 23365 ACAGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCACCACTT 23307 Query 117459 CATTGCCCATTTCGCCTTCTTCT 117481 | ||||| | ||| ||||||| Sbjct 23306 GAGCGCCCAGTGCGCTTTCTTCT 23284 >seq544 Length=17931 Score = 95.1 bits (104), Expect = 1e-14 Identities = 331/503 (66%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 6728 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATCATGTCCATC 6787 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | | ||||| |||| | || || || || Sbjct 6788 CAGTCGAAGGGGTTCTTGACGTTGTAGAGCTTGGGCACGCCCAGCGAGTAC-AGCAGGCG 6846 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||||| | |||| | |||||||| |||||||| | || Sbjct 6847 GTCGGCCACGAACTCGATGTACTGGCACATGAGCGTCGAGTTCATGCCGATGAGCTC-CA 6905 Query 117165 TGGG-AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 ||| || | ||| | | |||| | | ||| || || ||||| ||||| ||| Sbjct 6906 CGGGCAGCGAGTCGCACACGAACTCGTGCTCGATGGTGACGGCCTCACGGACGATCTCGT 6965 Query 117224 GGATAG---TTTCGGTA-GTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | |||| | || || | | || | | | ||| |||| | || Sbjct 6966 GCACGCGGCTCTCGGGAAGTTTGTTGACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 7021 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||||| Sbjct 7022 TCCGTGTGCATGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGCTCAGGCCGGGCATG 7081 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | || | |||||| || || ||||||||||| || || Sbjct 7082 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCCGAGAAGAAGATGCCTTCA 7141 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGA-CTTTGTGTCAAACCATTT 117458 || || ||||| | || ||||| | | | || ||| | | | ||| |||| || Sbjct 7142 ACCGCAGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACCCGCGGGTCGCACCACTT 7200 Query 117459 CATTGCCCATTTCGCCTTCTTCT 117481 | ||||| | ||||||||||| Sbjct 7201 GAGCGCCCAGTGCGCCTTCTTCT 7223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589921189814920