Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20pisi_20[genbank_20GCA_5F000751395.1_202014-07-22]
8,083 sequences; 58,815,051 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq5736 138 3e-27
seq21 116 8e-21
seq5227 109 1e-18
>seq5736
Length=80658
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| || || || ||||| ||| || || | || || |||
Sbjct 56823 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCG 56764
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 56763 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 56704
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| |||||||||||||| || || | |||||| ||||| || || || | ||||||
Sbjct 56703 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 56644
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 56643 CCAGTCAGGGTCTTCACGAAGATCTGCAT 56615
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| || || || ||||| ||| || || | || || |||
Sbjct 57051 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGGCCGTCCTCG 56992
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 56991 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 56932
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| |||||||||||||| || || | |||||| ||||| || || || | ||||||
Sbjct 56931 ATCTTTTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTG 56872
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| || || ||||| | |||||
Sbjct 56871 CCAGTCAGGGTCTTCACGAAGATCTGCAT 56843
>seq21
Length=30282
Score = 116 bits (128), Expect = 8e-21
Identities = 192/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648
|||||||| | ||| ||||||| ||||||||||| ||| | | |||||| | |||
Sbjct 3120 TTCTACGCGCTGTGGGTGCCCGATCTGTTCATGAAGAGGGTGGAGGCCAATGGCAAGTGG 3179
Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708
|| || ||||| ||||||||||| |||||||| | || | || ||||| |||
Sbjct 3180 AGTCTGTTCTGCCCCAATGAAGCCCCTGGACTCTACGAGTGCTGGGGCGAGGAGTTTGAG 3239
Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGC---CAAAAAGGTCGTGAAGGCCCAA 160765
|| |||||||||| ||||| || |||||| | || ||| | | || || || ||
Sbjct 3240 ACCCTTTATGAAAAGTACGAGAAGGAGGGACGCGCGCGCAAGACGATC---AACGCGCAG 3296
Query 160766 GAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATAC 160825
| |||||| |||||| | ||| || ||||| ||| ||||||| || |||
Sbjct 3297 CAGCTGTGGTTCGCCATCCTGGACGCGCAGATCGAGACGGGCGTGCCCTTCATGCTCTAC 3356
Query 160826 AAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861
||||| || || || ||| |||||| |||||
Sbjct 3357 AAGGACGCGGTCAACCGGAAGTCGAACCAGCAGAAC 3392
>seq5227
Length=11794
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| || | || || | || || ||||||||||| || ||||||||
Sbjct 2200 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 2259
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || || ||||| || || ||||| || ||||| || ||||| |||||||| || |||
Sbjct 2260 AGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 2319
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
||| |||| || ||||| || || || | ||||| || |||| || || || ||
Sbjct 2320 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 2379
Query 195133 ACTTGCAT 195140
| |||||
Sbjct 2380 ATCTGCAT 2387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109366698271661
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |